Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOY26_RS02485 Genome accession   NZ_CP087169
Coordinates   550232..550783 (+) Length   183 a.a.
NCBI ID   WP_033703483.1    Uniprot ID   A0A6L6TJ34
Organism   Pseudomonas sp. B21-047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 545232..555783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY26_RS02470 (LOY26_02470) bfr 545331..545795 (+) 465 WP_008089766.1 bacterioferritin -
  LOY26_RS02475 (LOY26_02475) uvrA 545864..548698 (-) 2835 WP_186661303.1 excinuclease ABC subunit UvrA -
  LOY26_RS02480 (LOY26_02480) - 548828..550222 (+) 1395 WP_095065585.1 MFS transporter -
  LOY26_RS02485 (LOY26_02485) ssb 550232..550783 (+) 552 WP_033703483.1 single-stranded DNA-binding protein Machinery gene
  LOY26_RS02490 (LOY26_02490) - 550893..551387 (-) 495 WP_258714348.1 heme-binding protein -
  LOY26_RS02495 (LOY26_02495) - 551516..552904 (-) 1389 WP_258714349.1 PLP-dependent aminotransferase family protein -
  LOY26_RS02500 (LOY26_02500) - 553347..554372 (+) 1026 WP_033703480.1 TauD/TfdA family dioxygenase -
  LOY26_RS02505 (LOY26_02505) - 554404..555189 (+) 786 WP_033703479.1 TSUP family transporter -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20421.52 Da        Isoelectric Point: 5.9312

>NTDB_id=627174 LOY26_RS02485 WP_033703483.1 550232..550783(+) (ssb) [Pseudomonas sp. B21-047]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQGGGDQYNQGGGNNYNQGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=627174 LOY26_RS02485 WP_033703483.1 550232..550783(+) (ssb) [Pseudomonas sp. B21-047]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAAATTGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCGCAGAACCAGCAAGGTGGCGGCGACCAGTACAACCAGGGTGGTGGTAACAACTACA
ACCAGGGTGGCCAGCAGCAACAGTACAACCAGGCGCCGCCACGTCAGCAGGCCCAACGCCCGCAGCAGGCGCCACAGCGC
CCTGCACCGCAGCAGCCAGCGCCGCAGCCGGCCGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L6TJ34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.348

100

0.546
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.514
  ssb Neisseria meningitidis MC58

49.189

100

0.497
  ssb Neisseria gonorrhoeae MS11

49.189

100

0.497