Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY52_RS22920 Genome accession   NZ_CP087166
Coordinates   5096676..5098022 (+) Length   448 a.a.
NCBI ID   WP_258676058.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-051     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5091676..5103022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY52_RS22895 (LOY52_22865) pgeF 5091885..5092607 (-) 723 WP_258676057.1 peptidoglycan editing factor PgeF -
  LOY52_RS22900 (LOY52_22870) rluD 5092604..5093566 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY52_RS22905 (LOY52_22875) - 5093718..5094740 (+) 1023 WP_123588157.1 outer membrane protein assembly factor BamD -
  LOY52_RS22910 (LOY52_22880) - 5094867..5095100 (+) 234 WP_007963850.1 PP0621 family protein -
  LOY52_RS22915 (LOY52_22885) pilS 5095090..5096679 (+) 1590 WP_258680029.1 PAS domain-containing sensor histidine kinase Regulator
  LOY52_RS22920 (LOY52_22890) pilR 5096676..5098022 (+) 1347 WP_258676058.1 sigma-54 dependent transcriptional regulator Regulator
  LOY52_RS22925 (LOY52_22895) thiO 5098111..5099211 (-) 1101 WP_258676059.1 glycine oxidase ThiO -
  LOY52_RS22930 (LOY52_22900) - 5099269..5099670 (-) 402 WP_258676060.1 type IV pilin protein -
  LOY52_RS22935 (LOY52_22905) - 5099686..5102769 (-) 3084 WP_258676061.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49742.04 Da        Isoelectric Point: 6.7699

>NTDB_id=627101 LOY52_RS22920 WP_258676058.1 5096676..5098022(+) (pilR) [Pseudomonas sp. B21-051]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLHNNTFDLCLTDMRLPDGTGLDLVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAAGGASSPIDRRLLGDSQPMRDLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAAKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQEAVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLQRLAAGSGRAAARLHPQALEALKSYRFPGNVRELENVLERAHTLCENQLIEAADLRLSEGNCAVEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=627101 LOY52_RS22920 WP_258676058.1 5096676..5098022(+) (pilR) [Pseudomonas sp. B21-051]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGATGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGGCGAAGCCCAAGCGTTGCTGCACAACAACACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCGGACGGCACGGGGCTGGACTTGGTGCAGCACATCCAGCAACGCTATCCACAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCGATCAATGCGCTGAAGGCCGGGGCCTTCGACTTCCTCACCAA
ACCGGTTGATCTCACGCGCCTGCGCGAACTGGTCAGCACCGCATTGCGCATGCCGGCGGCGGGTGGCGCCAGTTCGCCGA
TCGATCGACGCCTGCTCGGCGACTCGCAGCCCATGCGAGACCTGCGCAAACAGATCGACAAACTGGCGCGCAGTCAGGCC
CCGGTCTACATCAGCGGTGAATCGGGCAGCGGCAAAGAACTGGTCGCACGGCTGATCCACGAACAGGGGCCGCGCGCCGC
CAAGCCGTTCGTGCCGGTCAATTGCGGGGCAATTCCGTCCGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAGGGCA
GCTTCACCGGCGCAGTCGAGGATAAACCCGGACTGTTCCAGGCTGCCCACGGCGGCACCCTGTTCCTCGATGAGGTCGCC
GACCTGCCGCTGTCGATGCAGGTGAAATTGCTGCGAGCAATTCAGGAGAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AGCGGTGGTTGATGTGCGCATTCTTTGCGCCACCCACAAGGATCTCGACGCCGAGGTCGCCGCCGGACGCTTTCGCCAGG
ATCTGTATTACCGCTTGAACGTGATCGAACTGCGCGTGCCATCCCTGCGCGAACGGCGCGATGACATCGAAGTGCTGGCT
GCGCACATGCTCCAGCGTCTGGCGGCAGGCAGCGGCCGCGCGGCGGCCCGCCTGCACCCGCAGGCACTTGAGGCGCTGAA
GAGTTACCGCTTTCCGGGGAATGTGCGGGAGCTGGAAAACGTCCTCGAACGGGCGCACACGTTGTGTGAAAACCAGTTGA
TCGAGGCGGCGGACTTACGTCTCAGCGAAGGTAATTGCGCGGTCGAAGGCGGTATTGCCGACCTGACGCAGATCGACAAC
CTTGAGGACTATCTGGAGAACGTCGAGCGCAAGCTGATCCTGCAGGCGCTGGAGGAAACGCGCTGGAATCGTACAGCGGC
GGCGCAGCGCTTGAGCCTTTCGTTTCGGTCGATGCGTTATAGGCTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.007

98.884

0.781
  pilR Acinetobacter baumannii strain A118

48.366

100

0.496