Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LN047_RS28015 Genome accession   NZ_CP087159
Coordinates   6090036..6090554 (-) Length   172 a.a.
NCBI ID   WP_062838810.1    Uniprot ID   -
Organism   Achromobacter sp. JD417     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6085036..6095554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN047_RS27990 (LN047_27930) - 6085299..6086849 (-) 1551 WP_179690674.1 AAA family ATPase -
  LN047_RS27995 (LN047_27935) - 6086859..6087434 (-) 576 WP_373980808.1 hypothetical protein -
  LN047_RS28000 (LN047_27940) - 6087431..6087625 (-) 195 WP_373980809.1 hypothetical protein -
  LN047_RS28005 (LN047_27945) - 6087629..6089341 (-) 1713 WP_373980810.1 hypothetical protein -
  LN047_RS28010 (LN047_27950) - 6089354..6089845 (-) 492 WP_373980811.1 hypothetical protein -
  LN047_RS28015 (LN047_27955) ssb 6090036..6090554 (-) 519 WP_062838810.1 single-stranded DNA-binding protein Machinery gene
  LN047_RS28020 (LN047_27960) - 6090850..6092034 (-) 1185 WP_373980812.1 MFS transporter -
  LN047_RS28025 (LN047_27965) uvrA 6092272..6095127 (+) 2856 WP_373980813.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18463.48 Da        Isoelectric Point: 5.9656

>NTDB_id=627024 LN047_RS28015 WP_062838810.1 6090036..6090554(-) (ssb) [Achromobacter sp. JD417]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSSWKDKASGEKREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPRQQRAAPAQRPAPQQRPAAPAAAPASSG
ANLADMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=627024 LN047_RS28015 WP_062838810.1 6090036..6090554(-) (ssb) [Achromobacter sp. JD417]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCGGC
AATCTGCAACATGTCGATCGCCACGACCTCGTCCTGGAAGGACAAGGCCAGCGGCGAAAAGCGCGAAGAAACCGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGCCTCAAGACGCGCAAGTGGCAAGATAAGGACACCGGCGCCGACCGGTACAGCACCGAAATCGTCGCTGACCAGATGCA
AATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGGCAGCTACGGCGGCGGTGGCGGCTACGATGACGCCCCGCGCC
AGCAACGCGCCGCCCCGGCGCAGCGCCCCGCGCCCCAGCAGCGCCCGGCGGCTCCCGCAGCGGCCCCGGCCAGCAGCGGC
GCCAATCTGGCGGACATGGACGACGATATTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.747

100

0.558
  ssb Glaesserella parasuis strain SC1401

50.802

100

0.552
  ssb Neisseria meningitidis MC58

51.136

100

0.523
  ssb Neisseria gonorrhoeae MS11

51.136

100

0.523