Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LOK79_RS19225 Genome accession   NZ_CP087137
Coordinates   3887594..3888112 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain JIN4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3882594..3893112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK79_RS19195 (LOK79_19195) - 3883794..3884174 (-) 381 WP_058906501.1 VOC family protein -
  LOK79_RS19200 (LOK79_19200) - 3884231..3885169 (-) 939 WP_024086045.1 LacI family DNA-binding transcriptional regulator -
  LOK79_RS19205 (LOK79_19205) xth 3885232..3885990 (-) 759 WP_058906502.1 exodeoxyribonuclease III -
  LOK79_RS19210 (LOK79_19210) - 3885987..3886544 (-) 558 WP_014306207.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LOK79_RS19215 (LOK79_19215) - 3886541..3887122 (-) 582 WP_044052734.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  LOK79_RS19220 (LOK79_19220) rpsR 3887311..3887550 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  LOK79_RS19225 (LOK79_19225) ssbA 3887594..3888112 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  LOK79_RS19230 (LOK79_19230) rpsF 3888152..3888439 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  LOK79_RS19235 (LOK79_19235) ychF 3888551..3889651 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  LOK79_RS19240 (LOK79_19240) - 3889778..3891781 (-) 2004 WP_058906503.1 molybdopterin-dependent oxidoreductase -
  LOK79_RS19245 (LOK79_19245) - 3891828..3892034 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=626900 LOK79_RS19225 WP_004392979.1 3887594..3888112(-) (ssbA) [Bacillus velezensis strain JIN4]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=626900 LOK79_RS19225 WP_004392979.1 3887594..3888112(-) (ssbA) [Bacillus velezensis strain JIN4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378