Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LNM86_RS05010 Genome accession   NZ_CP087114
Coordinates   1061262..1061780 (+) Length   172 a.a.
NCBI ID   WP_241438681.1    Uniprot ID   -
Organism   Bartonella machadoae strain 46A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1056262..1066780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNM86_RS05000 (LNM86_05000) - 1057408..1057746 (-) 339 WP_241438679.1 P-II family nitrogen regulator -
  LNM86_RS05005 (LNM86_05005) uvrA 1058032..1060932 (-) 2901 WP_241438680.1 excinuclease ABC subunit UvrA -
  LNM86_RS05010 (LNM86_05010) ssb 1061262..1061780 (+) 519 WP_241438681.1 single-stranded DNA-binding protein Machinery gene
  LNM86_RS05015 (LNM86_05015) gyrA 1061997..1064777 (+) 2781 WP_241438682.1 DNA gyrase subunit A -
  LNM86_RS05020 (LNM86_05020) coaD 1064802..1065320 (+) 519 WP_241438683.1 pantetheine-phosphate adenylyltransferase -
  LNM86_RS05025 (LNM86_05025) - 1065310..1065903 (+) 594 WP_241438924.1 peptidylprolyl isomerase -
  LNM86_RS05030 (LNM86_05030) - 1065923..1066435 (+) 513 WP_241438684.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19408.24 Da        Isoelectric Point: 6.1104

>NTDB_id=626689 LNM86_RS05010 WP_241438681.1 1061262..1061780(+) (ssb) [Bartonella machadoae strain 46A]
MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHSIVIFNENLIRVVEQYLKKGSKIYI
EGQLQTRKWQDQNGNDRYTTEVVLQKYRGELQMLDGRGGAGGEQMQGANQSSGSYGGGGFGDSYSGHRDDFGQNNHQARE
DFSHKLDDDVPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=626689 LNM86_RS05010 WP_241438681.1 1061262..1061780(+) (ssb) [Bartonella machadoae strain 46A]
ATGGCTGGTAGCCTTAATAAAGTGATTTTAATTGGTAATCTTGGTGCTGATCCTGAAATTCGCCGCTTGAATTCTGGTGA
TCAAGTGGCAAATTTGCGTATTGCTACTTCAGAAAGCTGGCGCGATCGTAATACAAATGAACGTAAAGAGCGCACAGAGT
GGCATAGTATCGTTATTTTTAACGAAAACCTTATCAGAGTTGTGGAACAATATTTAAAAAAAGGAAGCAAAATCTATATT
GAAGGTCAGCTGCAAACACGCAAGTGGCAAGATCAAAATGGGAATGATCGTTATACAACAGAGGTTGTTTTGCAAAAATA
CCGTGGTGAATTGCAAATGCTTGATGGACGGGGTGGTGCTGGTGGAGAGCAAATGCAAGGGGCAAATCAGTCAAGCGGAA
GTTATGGCGGTGGTGGTTTTGGTGACAGTTATTCTGGTCACAGAGATGATTTTGGTCAAAACAATCATCAAGCAAGAGAA
GACTTTTCACATAAATTAGATGATGACGTTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.663

100

0.529
  ssb Vibrio cholerae strain A1552

49.133

100

0.494
  ssb Neisseria meningitidis MC58

40.223

100

0.419
  ssb Neisseria gonorrhoeae MS11

37.037

100

0.407