Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   N2A93_RS07915 Genome accession   NZ_CP104046
Coordinates   1557917..1558588 (-) Length   223 a.a.
NCBI ID   WP_037622055.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552917..1563588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS07910 (N2A93_07910) hpf 1557294..1557842 (-) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  N2A93_RS07915 (N2A93_07915) comFC/cflB 1557917..1558588 (-) 672 WP_037622055.1 ComF family protein Machinery gene
  N2A93_RS07920 (N2A93_07920) comFA/cflA 1558578..1559882 (-) 1305 WP_003107488.1 DEAD/DEAH box helicase Machinery gene
  N2A93_RS07925 (N2A93_07925) - 1559939..1560571 (+) 633 WP_003107489.1 YigZ family protein -
  N2A93_RS07930 (N2A93_07930) cysK 1560694..1561623 (+) 930 WP_003103108.1 cysteine synthase A -
  N2A93_RS07935 (N2A93_07935) - 1561699..1562052 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  N2A93_RS07940 (N2A93_07940) - 1562052..1563452 (-) 1401 WP_003107491.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25845.06 Da        Isoelectric Point: 8.7227

>NTDB_id=626544 N2A93_RS07915 WP_037622055.1 1557917..1558588(-) (comFC/cflB) [Streptococcus parauberis strain KSP14]
MVNKCLICGENCRPRLSFTDICFMVNRQSQLCETCSGLFERIGRKHCPTCCKVGLELMCSDCKSWFENGVEVSHKALYKY
NLAMKDYFSKYKFQGDYLLKSIFSKELKIYIEKNYEGYTNLVVPISQSRMETRGFNQVSSILADVNIPYIDILRKCEGKK
QSEKTKHQRLESENQFSLLHIENLPKKILIIDDIYTTGTTISQIRKLLHQHGINDIKSVSIAR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=626544 N2A93_RS07915 WP_037622055.1 1557917..1558588(-) (comFC/cflB) [Streptococcus parauberis strain KSP14]
ATGGTGAATAAGTGTTTAATATGTGGAGAAAATTGTAGACCAAGATTATCATTTACGGATATCTGTTTTATGGTGAATCG
CCAAAGCCAACTGTGTGAAACATGTTCTGGCTTATTCGAAAGAATTGGTAGGAAACATTGCCCAACCTGTTGCAAAGTTG
GTTTAGAATTAATGTGTAGTGACTGTAAATCATGGTTTGAAAATGGGGTAGAAGTATCACACAAAGCACTATATAAGTAT
AATTTAGCAATGAAAGATTATTTTTCTAAATACAAGTTTCAAGGTGACTATTTATTAAAAAGTATATTTTCTAAAGAATT
AAAAATATACATTGAAAAGAATTATGAAGGTTATACAAATCTGGTTGTACCAATTAGCCAGAGTAGAATGGAAACGCGTG
GGTTTAATCAAGTATCCTCAATTCTTGCAGACGTCAATATTCCTTATATAGATATCTTACGAAAATGTGAAGGAAAAAAG
CAGTCTGAGAAAACCAAACATCAAAGGCTAGAATCTGAGAATCAATTTTCACTTCTTCATATAGAAAATCTTCCAAAAAA
AATACTAATTATTGATGATATTTATACGACGGGGACAACAATTTCACAAATCAGAAAGTTGTTACATCAGCATGGTATAA
ATGATATAAAAAGTGTATCGATAGCAAGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(135-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45

98.655

0.444
  comFC/cflB Streptococcus pneumoniae TIGR4

44.091

98.655

0.435
  comFC/cflB Streptococcus pneumoniae Rx1

43.636

98.655

0.43
  comFC/cflB Streptococcus pneumoniae D39

43.636

98.655

0.43
  comFC/cflB Streptococcus pneumoniae R6

43.636

98.655

0.43
  comFC/cflB Streptococcus mitis SK321

43.182

98.655

0.426