Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   N2A93_RS07040 Genome accession   NZ_CP104046
Coordinates   1376716..1377651 (-) Length   311 a.a.
NCBI ID   WP_003107264.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1371716..1382651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS07020 (N2A93_07020) - 1372040..1372690 (-) 651 WP_003107256.1 HAD family phosphatase -
  N2A93_RS07025 (N2A93_07025) - 1372704..1373945 (-) 1242 WP_003107259.1 OFA family MFS transporter -
  N2A93_RS07030 (N2A93_07030) - 1374079..1374717 (-) 639 WP_003107261.1 HAD family phosphatase -
  N2A93_RS07035 (N2A93_07035) pepF 1374888..1376690 (-) 1803 WP_003107263.1 oligoendopeptidase F Regulator
  N2A93_RS07040 (N2A93_07040) coiA 1376716..1377651 (-) 936 WP_003107264.1 competence protein CoiA Machinery gene
  N2A93_RS07045 (N2A93_07045) - 1377722..1378867 (-) 1146 WP_003107265.1 MFS transporter -
  N2A93_RS07050 (N2A93_07050) - 1378967..1379683 (-) 717 WP_003107266.1 pseudouridine synthase -
  N2A93_RS07055 (N2A93_07055) nagB 1379760..1380464 (-) 705 WP_003104983.1 glucosamine-6-phosphate deaminase -
  N2A93_RS07060 (N2A93_07060) queA 1380656..1381684 (+) 1029 WP_003107267.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 36570.68 Da        Isoelectric Point: 8.7619

>NTDB_id=626535 N2A93_RS07040 WP_003107264.1 1376716..1377651(-) (coiA) [Streptococcus parauberis strain KSP14]
MLVAIDDLGNRLTTLDNLPKTGIYYCPVCKGQVTLKRGKVKQAHFAHKNLLNCPNSSLNESTEHLLLKAKLYQNLKKSEE
VTIETFFPSINQIADLQVNHKLVLEVQCSSLPPDRLVERTKNYRDNDQYIIWLLGKNLWIKHKLSYLQKQFLSFSWSIGF
YLWEIDLEKNCLRLCYMIHEDLMGKVTCLTRTCPLDGNLMSFFRMPFQKMNLEPIKIKSDSHLLQKIQKALKYRNKYWML
RQEKAYQMGINLLCLSVEDFYPQYNPPKCEQGFCLIESDLKPFYDAFEAYNKEISNKDVQTLHPPSFYVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=626535 N2A93_RS07040 WP_003107264.1 1376716..1377651(-) (coiA) [Streptococcus parauberis strain KSP14]
ATGTTAGTTGCAATTGATGATTTGGGGAATCGGCTCACCACCTTAGATAATTTACCCAAAACAGGTATCTATTACTGTCC
AGTATGTAAAGGTCAAGTCACTTTAAAGAGAGGAAAAGTGAAACAAGCACATTTTGCTCATAAGAATTTATTAAATTGTC
CTAACAGCTCACTTAACGAATCAACGGAACATTTATTACTCAAGGCTAAACTCTACCAGAATCTTAAAAAGAGTGAAGAA
GTGACGATTGAAACCTTTTTTCCAAGTATAAATCAAATTGCTGATTTACAAGTCAATCATAAATTAGTATTAGAAGTCCA
GTGTAGTTCATTACCTCCAGATAGATTAGTGGAACGAACAAAAAATTATAGAGACAATGATCAATACATTATCTGGTTAT
TAGGTAAGAATCTATGGATAAAGCATAAATTAAGTTATCTTCAAAAACAATTCTTATCATTTTCTTGGTCGATAGGCTTC
TATCTCTGGGAAATTGATCTAGAAAAAAATTGCCTAAGACTCTGCTATATGATTCATGAGGATTTAATGGGGAAGGTAAC
TTGTTTAACTAGAACTTGTCCTCTGGATGGGAACCTTATGTCATTTTTTAGAATGCCATTTCAAAAAATGAATCTAGAAC
CTATCAAGATAAAAAGCGATAGCCATCTTCTGCAAAAAATTCAAAAAGCTTTGAAATATCGGAATAAGTATTGGATGCTT
AGGCAGGAAAAAGCCTATCAAATGGGAATTAATCTTTTATGTTTGTCGGTTGAGGATTTTTATCCGCAATATAATCCACC
TAAGTGTGAGCAAGGATTCTGTTTAATTGAGTCGGATTTAAAACCTTTTTATGATGCATTTGAGGCATATAATAAAGAAA
TTTCTAATAAAGACGTGCAAACGCTTCACCCTCCTAGCTTTTATGTTAAAATATGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.042

99.357

0.428
  coiA Streptococcus pneumoniae TIGR4

39.806

99.357

0.396
  coiA Streptococcus pneumoniae Rx1

39.806

99.357

0.396
  coiA Streptococcus pneumoniae D39

39.806

99.357

0.396
  coiA Streptococcus pneumoniae R6

39.806

99.357

0.396
  coiA Lactococcus lactis subsp. cremoris KW2

36.957

100

0.383