Detailed information NTG0626281

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: LJN47_RS00960
• Genome accession: NZ_CP086760
• Coordinates: 202952..204088 (+)
• Length: 378 a.a.
• NCBI ID: WP_220946695.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 3192
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 197952..209088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJN47_RS00925 (LJN47_00925)	panD	198412..198765 (+)	354	WP_229929873.1	aspartate 1-decarboxylase	-
LJN47_RS00930 (LJN47_00930)	-	198768..199061 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
LJN47_RS00935 (LJN47_00935)	-	199061..200056 (+)	996	WP_229930182.1	PDZ domain-containing protein	-
LJN47_RS00940 (LJN47_00940)	comB6	200064..201119 (+)	1056	WP_229930183.1	P-type conjugative transfer protein TrbL	Machinery gene
LJN47_RS00945 (LJN47_00945)	comB7	201135..201248 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
LJN47_RS00950 (LJN47_00950)	comB8	201245..201982 (+)	738	WP_229929874.1	type IV secretion system protein	Machinery gene
LJN47_RS00955 (LJN47_00955)	comB9	201982..202959 (+)	978	WP_229929875.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LJN47_RS00960 (LJN47_00960)	comB10	202952..204088 (+)	1137	WP_220946695.1	DNA type IV secretion system protein ComB10	Machinery gene
LJN47_RS00965 (LJN47_00965)	-	204159..205571 (+)	1413	WP_220946694.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LJN47_RS00970 (LJN47_00970)	gmd	205600..206748 (+)	1149	Protein_188	GDP-mannose 4,6-dehydratase	-
LJN47_RS00975 (LJN47_00975)	-	206741..207673 (+)	933	WP_229929876.1	GDP-L-fucose synthase family protein	-
LJN47_RS00980 (LJN47_00980)	-	208067..208426 (-)	360	WP_164872608.1	hypothetical protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42188.86 Da
• Isoelectric Point: 10.0192

>NTDB_id=626281 LJN47_RS00960 WP_220946695.1 202952..204088(+) (comB10) [Helicobacter pylori strain 3192]
MNKWLKGAVVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDSKTKPTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=626281 LJN47_RS00960 WP_220946695.1 202952..204088(+) (comB10) [Helicobacter pylori strain 3192]
ATGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAACCTTTTGAATGACGATGAGGTGAAATACCCCCTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGTTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTCAAAAAC
AAAACCAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGTTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTG
GGATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTATTTATTTCGCCCAATACTGACATCTTTTTCCCTATACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	97.09	100	0.971