Detailed information NTG0626277

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: LJN47_RS00940
• Genome accession: NZ_CP086760
• Coordinates: 200064..201119 (+)
• Length: 351 a.a.
• NCBI ID: WP_229930183.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 3192
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 195064..206119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJN47_RS00910 (LJN47_00910)	-	195484..195897 (+)	414	WP_001023008.1	universal stress protein	-
LJN47_RS00915 (LJN47_00915)	-	195928..196203 (+)	276	WP_229929871.1	ATP-dependent Clp protease adaptor ClpS	-
LJN47_RS00920 (LJN47_00920)	-	196203..198422 (+)	2220	WP_229929872.1	AAA family ATPase	-
LJN47_RS00925 (LJN47_00925)	panD	198412..198765 (+)	354	WP_229929873.1	aspartate 1-decarboxylase	-
LJN47_RS00930 (LJN47_00930)	-	198768..199061 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
LJN47_RS00935 (LJN47_00935)	-	199061..200056 (+)	996	WP_229930182.1	PDZ domain-containing protein	-
LJN47_RS00940 (LJN47_00940)	comB6	200064..201119 (+)	1056	WP_229930183.1	P-type conjugative transfer protein TrbL	Machinery gene
LJN47_RS00945 (LJN47_00945)	comB7	201135..201248 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
LJN47_RS00950 (LJN47_00950)	comB8	201245..201982 (+)	738	WP_229929874.1	type IV secretion system protein	Machinery gene
LJN47_RS00955 (LJN47_00955)	comB9	201982..202959 (+)	978	WP_229929875.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LJN47_RS00960 (LJN47_00960)	comB10	202952..204088 (+)	1137	WP_220946695.1	DNA type IV secretion system protein ComB10	Machinery gene
LJN47_RS00965 (LJN47_00965)	-	204159..205571 (+)	1413	WP_220946694.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39704.70 Da
• Isoelectric Point: 8.8165

>NTDB_id=626277 LJN47_RS00940 WP_229930183.1 200064..201119(+) (comB6) [Helicobacter pylori strain 3192]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGMPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=626277 LJN47_RS00940 WP_229930183.1 200064..201119(+) (comB6) [Helicobacter pylori strain 3192]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGTTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGCTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGATTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTCTAAAAAAATGCTTCGCTCTTGGGTTTTATAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCATGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969