Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   LJN47_RS00950 Genome accession   NZ_CP086760
Coordinates   201245..201982 (+) Length   245 a.a.
NCBI ID   WP_229929874.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3192     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 196245..206982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN47_RS00925 (LJN47_00925) panD 198412..198765 (+) 354 WP_229929873.1 aspartate 1-decarboxylase -
  LJN47_RS00930 (LJN47_00930) - 198768..199061 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  LJN47_RS00935 (LJN47_00935) - 199061..200056 (+) 996 WP_229930182.1 PDZ domain-containing protein -
  LJN47_RS00940 (LJN47_00940) comB6 200064..201119 (+) 1056 WP_229930183.1 P-type conjugative transfer protein TrbL Machinery gene
  LJN47_RS00945 (LJN47_00945) comB7 201135..201248 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  LJN47_RS00950 (LJN47_00950) comB8 201245..201982 (+) 738 WP_229929874.1 type IV secretion system protein Machinery gene
  LJN47_RS00955 (LJN47_00955) comB9 201982..202959 (+) 978 WP_229929875.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  LJN47_RS00960 (LJN47_00960) comB10 202952..204088 (+) 1137 WP_220946695.1 DNA type IV secretion system protein ComB10 Machinery gene
  LJN47_RS00965 (LJN47_00965) - 204159..205571 (+) 1413 WP_220946694.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  LJN47_RS00970 (LJN47_00970) gmd 205600..206748 (+) 1149 Protein_188 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28546.73 Da        Isoelectric Point: 8.9546

>NTDB_id=626279 LJN47_RS00950 WP_229929874.1 201245..201982(+) (comB8) [Helicobacter pylori strain 3192]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIAFILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=626279 LJN47_RS00950 WP_229929874.1 201245..201982(+) (comB8) [Helicobacter pylori strain 3192]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGCTTTATCGCTTTTATTTTAGCGATTGTTTTAATCAGTATTCTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAATCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATTGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTTTTGAACGAAAACAAGCTAGTGTATGAAAAGCGTTATAAAATCGCACTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGAGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.976