Detailed information NTG0626195

Bioinformatically predicted

Overview

• Name: comEC/celB
• Type: Machinery gene
• Locus tag: LOD77_RS03280
• Genome accession: NZ_CP086728
• Coordinates: 638039..640276 (+)
• Length: 745 a.a.
• NCBI ID: WP_274505722.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SS20
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 633039..645276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOD77_RS03250 (LOD77_03240)	-	634309..634716 (+)	408	WP_239604637.1	GNAT family N-acetyltransferase	-
LOD77_RS03255 (LOD77_03245)	-	634837..635448 (+)	612	WP_171988541.1	NAD(P)H-dependent oxidoreductase	-
LOD77_RS03260 (LOD77_03250)	-	635466..635738 (-)	273	WP_239604638.1	GIY-YIG nuclease family protein	-
LOD77_RS03265 (LOD77_03255)	-	635728..636477 (-)	750	WP_239604639.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
LOD77_RS03270 (LOD77_03260)	-	636569..637312 (+)	744	WP_172036418.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
LOD77_RS03275 (LOD77_03265)	-	637378..638055 (+)	678	WP_274505721.1	helix-hairpin-helix domain-containing protein	-
LOD77_RS03280 (LOD77_03270)	comEC/celB	638039..640276 (+)	2238	WP_274505722.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOD77_RS03285 (LOD77_03275)	holA	640340..641371 (+)	1032	WP_274505723.1	DNA polymerase III subunit delta	-
LOD77_RS03290 (LOD77_03280)	sodA	641448..642053 (+)	606	WP_171988548.1	superoxide dismutase SodA	-
LOD77_RS03295 (LOD77_03285)	rplS	642255..642602 (+)	348	WP_011921928.1	50S ribosomal protein L19	-
LOD77_RS03300 (LOD77_03290)	-	642875..644614 (+)	1740	WP_171988549.1	ABC transporter transmembrane domain-containing protein	-

Sequence

Protein

• Length: 745 a.a.
• Molecular weight: 84307.44 Da
• Isoelectric Point: 6.9651

>NTDB_id=626195 LOD77_RS03280 WP_274505722.1 638039..640276(+) (comEC/celB) [Streptococcus parasuis strain SS20]
MSRLIRLPCQPIHFAVLAVLAYFAVHSFSLLTMSLLSLLLAVFGLRQGKEVFIKTLPLLALCGLFFGCQKIQWERTNQWA
PEQVTTVQVIPDTIDVNGDSLSFRGRTEGQVFQVFYKLASQEEQTYFQELTDLVQLEVDAEVSQPAGQRNFNGFDYQAYL
KTQGIYRTVKISTINKIFPIHSWNIFDWLSTWRRQALVYIKSHFPAPMSHYMTGLLLGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWLLLRLGLTKETVDKLQIPFSLVYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAATVFVCLLLM
PRFLLTAGGVLTFTYALLLTVFDFEELRQLKKVAVESLSISLGILPVLMSYFFAFQPLSILLTFVFSFVFDVLLLPGLSV
ILLLSPFIKITWVNGFFILMEKIIVWVAELGISPWILGKPTGLVFLLLLVCLFLLYDFHREKKCLLGLSLMLALLFFITK
HPLENEVTVVDVGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWRERSREANAERTLIPYLHSRGVDRIDSLVLTHTDAD
HAGDVLEVAKQIQIGKIYVSPGSLTVPDFVATLRKINVPVHVVNPGDRLPIFDSYLEVLYPNRIGDGGNNDSIVLYGRLL
KMNFLFTGDLEQGELDLITSYPQLPVDVLKAGHHGSKGSSYPEFLDHIGAKIALISAGENNRYQHPHQETLERFDSQNMQ
VYRTDLQGAIRFRGWKQWSIETVKE

Nucleotide

• Length: 2238 bp

>NTDB_id=626195 LOD77_RS03280 WP_274505722.1 638039..640276(+) (comEC/celB) [Streptococcus parasuis strain SS20]
ATGTCACGGTTGATTAGACTCCCCTGTCAGCCCATTCACTTTGCAGTTTTGGCGGTGTTAGCCTACTTTGCTGTTCACTC
TTTTTCCCTTTTGACAATGAGCCTGCTGAGTCTGTTACTAGCAGTCTTTGGGCTTCGGCAAGGAAAGGAGGTCTTCATCA
AAACGCTACCGCTTCTAGCCTTATGTGGTCTCTTCTTCGGATGTCAGAAGATACAATGGGAGCGGACAAATCAATGGGCT
CCAGAGCAAGTGACAACTGTGCAGGTTATTCCTGATACCATTGATGTCAACGGAGACAGTCTATCTTTTCGTGGTCGGAC
TGAAGGTCAAGTTTTTCAGGTTTTCTATAAACTTGCAAGTCAGGAAGAACAAACCTATTTTCAGGAGCTTACGGACTTGG
TGCAGTTAGAGGTAGATGCAGAAGTTAGCCAACCAGCAGGTCAACGTAATTTCAATGGTTTTGATTATCAGGCTTATCTC
AAAACCCAGGGCATCTATCGGACAGTAAAAATAAGTACCATTAACAAAATTTTCCCTATTCATTCCTGGAATATCTTTGA
CTGGTTGTCAACCTGGCGGAGGCAGGCTCTCGTTTATATCAAATCTCATTTTCCTGCTCCAATGAGCCACTACATGACTG
GATTACTATTGGGAGAGTTAGATAGTGACTTTGACCAAATGAGTGACCTCTATTCTAGTTTAGGGATCATTCATCTTTTT
GCCCTGTCTGGGATGCAGGTTGGTTTTTTCATTGACAAATTTCGCTGGCTTTTATTGCGTTTGGGTTTAACCAAGGAAAC
TGTCGATAAGCTTCAAATTCCATTTTCTCTTGTTTATGCAGGATTGACAGGATTTTCAGTCTCAGTCGTGCGGTCCTTGG
TCCAGAAAATTCTGGGTAATCTTGGACTACGAAAATTGGATAATTTTGCAGCAACAGTCTTTGTTTGTCTCTTGCTTATG
CCACGGTTTCTTCTGACTGCAGGCGGTGTGCTAACATTTACCTATGCTTTGTTATTGACAGTCTTTGATTTTGAAGAGCT
AAGGCAACTTAAGAAGGTAGCAGTGGAGAGTCTGAGTATTTCTCTTGGAATTTTACCGGTCTTGATGTCCTATTTTTTTG
CCTTTCAGCCCTTATCTATCCTTTTAACGTTTGTTTTTTCCTTTGTTTTTGATGTGTTGTTGTTACCTGGGCTATCTGTC
ATTCTTTTACTATCGCCCTTCATTAAAATTACGTGGGTCAACGGATTCTTTATCCTTATGGAAAAGATTATTGTATGGGT
GGCAGAATTGGGGATTAGCCCTTGGATTTTAGGAAAACCTACGGGCCTTGTCTTTTTGCTCTTGCTGGTCTGCCTTTTCT
TGCTTTATGATTTTCACAGAGAGAAGAAATGCCTCCTAGGACTGAGCCTGATGCTTGCTCTGCTATTTTTCATAACCAAA
CACCCGCTGGAAAACGAGGTGACGGTGGTAGACGTAGGGCAGGGGGATAGTATCTTTTTGCGGGACATGCGGGGGCGGAC
GGTTCTGATTGATGTGGGTGGTCGGGTTGACTTTGCTGCAAAGGAAGCTTGGCGGGAGCGGTCTAGGGAAGCAAATGCGG
AGCGAACTCTGATTCCTTACCTGCATAGTCGAGGTGTGGATAGGATTGATAGCTTAGTCTTGACCCATACCGATGCAGAT
CATGCGGGTGATGTGCTAGAAGTGGCTAAGCAGATTCAGATCGGTAAGATTTACGTTTCTCCAGGTAGTTTGACTGTACC
AGATTTTGTTGCGACTTTGAGGAAAATAAATGTCCCTGTTCATGTTGTAAATCCTGGAGATCGATTGCCCATTTTTGATT
CCTATCTAGAAGTTCTATACCCCAATAGAATCGGAGATGGAGGCAATAATGACTCAATTGTACTCTATGGTCGTTTGTTA
AAAATGAATTTCCTCTTTACCGGTGACTTGGAGCAAGGGGAATTAGATTTAATCACTTCTTATCCGCAGCTACCAGTCGA
TGTGCTGAAAGCAGGTCACCATGGCTCCAAGGGCTCTTCATATCCAGAATTTTTAGACCATATTGGAGCAAAAATTGCTC
TGATTTCTGCAGGTGAAAATAATCGCTATCAACATCCGCATCAGGAAACTCTGGAACGTTTCGACAGTCAAAATATGCAG
GTTTACCGAACGGATCTGCAAGGAGCAATCCGTTTCCGAGGTTGGAAACAGTGGAGTATTGAAACGGTAAAAGAGTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (215-458)

• Domain of unknown function (DUF4131) (DUF4131) (30-176)

• Metallo-beta-lactamase superfamily (Lactamase_B) (491-698)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC/celB	Streptococcus mitis SK321	53.315	99.195	0.529
comEC/celB	Streptococcus mitis NCTC 12261	52.861	98.523	0.521
comEC/celB	Streptococcus pneumoniae TIGR4	52.109	98.658	0.514
comEC/celB	Streptococcus pneumoniae Rx1	51.429	98.658	0.507
comEC/celB	Streptococcus pneumoniae D39	51.429	98.658	0.507
comEC/celB	Streptococcus pneumoniae R6	51.429	98.658	0.507
comEC	Lactococcus lactis subsp. cremoris KW2	47.797	100	0.481