Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BS29_RS03390 Genome accession   NZ_CP086727
Coordinates   681121..681645 (+) Length   174 a.a.
NCBI ID   WP_229955814.1    Uniprot ID   -
Organism   Parasphingorhabdus litoris DSM 22379     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 676121..686645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS29_RS03365 - 676445..676900 (+) 456 WP_229955809.1 DUF1465 family protein -
  BS29_RS03370 - 676919..678016 (-) 1098 WP_229955810.1 alkene reductase -
  BS29_RS03375 - 678160..678837 (+) 678 WP_229955811.1 COQ9 family protein -
  BS29_RS03380 - 678951..679205 (+) 255 WP_229955812.1 FeoA family protein -
  BS29_RS03385 - 679209..681068 (+) 1860 WP_229955813.1 ferrous iron transporter B -
  BS29_RS03390 ssb 681121..681645 (+) 525 WP_229955814.1 single-stranded DNA-binding protein Machinery gene
  BS29_RS03395 - 681759..682478 (+) 720 WP_326838491.1 helix-turn-helix domain-containing protein -
  BS29_RS03400 ccoN 682623..684293 (+) 1671 WP_229955815.1 cytochrome-c oxidase, cbb3-type subunit I -
  BS29_RS03405 ccoO 684307..685041 (+) 735 WP_229955816.1 cytochrome-c oxidase, cbb3-type subunit II -
  BS29_RS03410 - 685038..685199 (+) 162 WP_229955817.1 cbb3-type cytochrome c oxidase subunit 3 -
  BS29_RS03415 ccoP 685192..686133 (+) 942 WP_229955818.1 cytochrome-c oxidase, cbb3-type subunit III -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18143.73 Da        Isoelectric Point: 4.8248

>NTDB_id=626167 BS29_RS03390 WP_229955814.1 681121..681645(+) (ssb) [Parasphingorhabdus litoris DSM 22379]
MAGGINKVIIVGNLGADPEVRTFNNGGKVCNLRIATSESWKDRNTGERKEKTEWHSVAIFQEGLVGVCEKYLRKGSKVYI
EGKLQTRKWQDQSGNDRYSTEVVLQGYDGKLEMLDSRQGGGMGGQGGGNDGWSGGGSGGGSGGGSNDGWGNTGGSSGGQG
GGAFDSDLDDDVPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=626167 BS29_RS03390 WP_229955814.1 681121..681645(+) (ssb) [Parasphingorhabdus litoris DSM 22379]
ATGGCTGGCGGCATCAACAAAGTAATTATCGTAGGAAATCTGGGTGCCGACCCTGAAGTGCGTACGTTCAACAATGGCGG
TAAAGTCTGCAATCTGCGCATCGCTACATCGGAAAGCTGGAAAGATCGTAACACCGGTGAACGCAAGGAAAAGACTGAGT
GGCATAGCGTTGCGATTTTTCAGGAAGGCCTGGTTGGCGTCTGCGAAAAATATCTTCGCAAGGGCAGCAAAGTGTATATC
GAGGGCAAGTTGCAGACCCGCAAATGGCAGGATCAGTCCGGCAATGATCGCTATTCAACGGAAGTTGTGCTGCAGGGCTA
TGATGGCAAGTTGGAAATGCTGGATTCCCGGCAAGGTGGCGGCATGGGCGGCCAAGGCGGCGGCAATGATGGCTGGAGCG
GCGGCGGTTCCGGTGGCGGATCGGGCGGTGGTTCCAATGATGGTTGGGGCAACACCGGCGGTTCATCAGGCGGTCAAGGC
GGCGGCGCATTTGACAGTGATCTCGATGACGACGTACCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.571

100

0.529
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.517
  ssb Neisseria meningitidis MC58

35.196

100

0.362
  ssb Neisseria gonorrhoeae MS11

35.196

100

0.362