Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LN243_RS12295 Genome accession   NZ_CP086659
Coordinates   2512800..2513309 (-) Length   169 a.a.
NCBI ID   WP_023349922.1    Uniprot ID   A0A7X9WHU6
Organism   Staphylococcus capitis strain XZ03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2507800..2518309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN243_RS12255 - 2508738..2508992 (-) 255 WP_002434433.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  LN243_RS12260 - 2509294..2509554 (+) 261 WP_002434577.1 hypothetical protein -
  LN243_RS12265 - 2509558..2510307 (-) 750 WP_030061295.1 amidohydrolase family protein -
  LN243_RS12270 - 2510464..2510721 (+) 258 WP_030061297.1 helix-turn-helix domain-containing protein -
  LN243_RS12275 - 2510792..2511145 (-) 354 WP_023349918.1 hypothetical protein -
  LN243_RS12280 - 2511229..2511801 (-) 573 WP_227959544.1 DUF5067 domain-containing protein -
  LN243_RS12285 - 2511929..2512183 (-) 255 WP_096389425.1 hypothetical protein -
  LN243_RS12290 rpsR 2512511..2512753 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  LN243_RS12295 ssbA 2512800..2513309 (-) 510 WP_023349922.1 single-stranded DNA-binding protein Machinery gene
  LN243_RS12300 rpsF 2513331..2513627 (-) 297 WP_002434058.1 30S ribosomal protein S6 -
  LN243_RS12305 - 2513760..2513924 (-) 165 Protein_2387 recombinase family protein -
  LN243_RS12310 - 2514040..2514786 (-) 747 WP_002434512.1 HAD family hydrolase -
  LN243_RS12315 - 2514790..2515206 (-) 417 WP_227489929.1 NUDIX hydrolase -
  LN243_RS12320 - 2515203..2516093 (-) 891 WP_030061331.1 DMT family transporter -
  LN243_RS12325 - 2516093..2516476 (-) 384 WP_030061333.1 NUDIX hydrolase -
  LN243_RS12330 - 2516489..2517166 (-) 678 WP_030061334.1 hypothetical protein -
  LN243_RS12335 - 2517170..2518309 (-) 1140 WP_070474342.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18672.18 Da        Isoelectric Point: 4.5778

>NTDB_id=626036 LN243_RS12295 WP_023349922.1 2512800..2513309(-) (ssbA) [Staphylococcus capitis strain XZ03]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSNANQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=626036 LN243_RS12295 WP_023349922.1 2512800..2513309(-) (ssbA) [Staphylococcus capitis strain XZ03]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAACTGTGTTGTCT
TTAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCTTACAATAACAATAATTCATCAAACGCTAATCAATCAGACAACCCATTTGCAAATGCTAATGGCCCAATC
GATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WHU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

54.913

100

0.562
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361