Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   LN051_RS03910 Genome accession   NZ_CP086654
Coordinates   838338..838967 (+) Length   209 a.a.
NCBI ID   WP_229293288.1    Uniprot ID   -
Organism   Staphylococcus ratti strain CCM 9025     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 833338..843967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN051_RS03885 (LN051_03885) - 834106..835101 (-) 996 WP_229293283.1 FUSC family protein -
  LN051_RS03890 (LN051_03890) map 835351..836109 (+) 759 WP_229293284.1 type I methionyl aminopeptidase -
  LN051_RS03895 (LN051_03895) - 836205..836594 (+) 390 WP_229293285.1 hypothetical protein -
  LN051_RS03900 (LN051_03900) liaF 836607..837308 (+) 702 WP_229293286.1 cell wall-active antibiotics response protein LiaF -
  LN051_RS03905 (LN051_03905) vraS 837305..838348 (+) 1044 WP_229293287.1 sensor histidine kinase Regulator
  LN051_RS03910 (LN051_03910) vraR 838338..838967 (+) 630 WP_229293288.1 response regulator transcription factor Regulator
  LN051_RS03915 (LN051_03915) - 839091..839657 (-) 567 WP_229293289.1 beta-class carbonic anhydrase -
  LN051_RS03920 (LN051_03920) - 839700..840965 (-) 1266 WP_229293290.1 YihY/virulence factor BrkB family protein -
  LN051_RS03925 (LN051_03925) - 841110..841385 (-) 276 WP_229293291.1 YtxH domain-containing protein -
  LN051_RS03930 (LN051_03930) - 841391..841849 (-) 459 WP_229293292.1 low molecular weight protein-tyrosine-phosphatase -
  LN051_RS03935 (LN051_03935) - 841991..842200 (+) 210 WP_229293293.1 DUF1128 domain-containing protein -
  LN051_RS03940 (LN051_03940) - 842225..843460 (+) 1236 WP_229293294.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23536.20 Da        Isoelectric Point: 4.8974

>NTDB_id=625953 LN051_RS03910 WP_229293288.1 838338..838967(+) (vraR) [Staphylococcus ratti strain CCM 9025]
MTIKVLFVDDHEMVRIGISSYLSTQTDIEVVGEGASGKEAIEKAHELQPDLILMDLVMTDMDGVEATMQIKKDLPRIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTAKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=625953 LN051_RS03910 WP_229293288.1 838338..838967(+) (vraR) [Staphylococcus ratti strain CCM 9025]
ATGACGATTAAAGTACTATTTGTAGATGACCATGAGATGGTAAGAATCGGCATTTCGAGTTATTTATCTACACAAACAGA
TATTGAAGTTGTTGGAGAAGGCGCTTCTGGTAAAGAAGCGATTGAAAAAGCACACGAACTGCAACCGGATTTAATATTAA
TGGATTTAGTGATGACAGATATGGACGGTGTAGAAGCTACAATGCAAATTAAAAAAGATTTGCCGCGTATAAAAGTTGTC
ATGCTCACAAGTTATATTGAAGATAAAGAGGTTTATCGCGCACTTGATGCTGGTGTAGACAGTTATATATTAAAAACAAC
AAGCGCAAGTGATATTGCAGAAGCGATCCGTAAAACTGCTAAAGGTGAATCGGTATTTGAAGCAGAAGTACTCGTTAAAA
TGAGAAATCGTATGCGACAACGGGCAGAGCTTTATGAGCTTTTAACAGAAAGAGAAATGGAAATTCTTTTACTCATTTCT
AAAGGCTACTCAAACCAAGAAATTGCCAGTGCGTCACATATTACGATTAAAACTGTTAAAACACACGTGAGTAATATATT
AAGTAAGTTAGAAGTACAAGACCGTACGCAAGCAGTAATTTATGCGTTTCAACATGGTCTTATTGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

89.952

100

0.9
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383
  letA Legionella pneumophila str. Paris

36.364

100

0.364
  letA Legionella pneumophila strain ERS1305867

36.364

100

0.364