Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DO80_RS04910 Genome accession   NZ_AP019730
Coordinates   973528..974079 (-) Length   183 a.a.
NCBI ID   WP_108304254.1    Uniprot ID   -
Organism   Helicobacter pylori strain TN2wt     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 968528..979079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DO80_RS04890 (DO80_09450) rpmB 968871..969059 (+) 189 WP_001119004.1 50S ribosomal protein L28 -
  DO80_RS04895 (DO80_09460) - 969210..970346 (+) 1137 WP_108303828.1 potassium channel family protein -
  DO80_RS04900 (DO80_09470) - 970331..970744 (-) 414 WP_108303829.1 hypothetical protein -
  DO80_RS04905 - 970759..973482 (-) 2724 Protein_935 DUF3519 domain-containing protein -
  DO80_RS04910 (DO80_09510) ruvA 973528..974079 (-) 552 WP_108304254.1 Holliday junction branch migration protein RuvA Machinery gene
  DO80_RS04915 (DO80_09520) - 974104..975948 (-) 1845 WP_108304253.1 FapA family protein -
  DO80_RS04920 (DO80_09530) murJ 976041..977501 (+) 1461 WP_108304252.1 murein biosynthesis integral membrane protein MurJ -
  DO80_RS04925 (DO80_09540) cysS 977502..978899 (+) 1398 WP_108304251.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20140.67 Da        Isoelectric Point: 7.4684

>NTDB_id=62575 DO80_RS04910 WP_108304254.1 973528..974079(-) (ruvA) [Helicobacter pylori strain TN2wt]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPAHNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLHS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=62575 DO80_RS04910 WP_108304254.1 973528..974079(-) (ruvA) [Helicobacter pylori strain TN2wt]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTCTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTTGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCACAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-182)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.896

100

0.929
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361