Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   VIBNI_RS05370 Genome accession   NC_022528
Coordinates   1200407..1200994 (+) Length   195 a.a.
NCBI ID   WP_004402628.1    Uniprot ID   A0AAV2W039
Organism   Vibrio nigripulchritudo     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195407..1205994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS05355 (VIBNI_A1113) panP 1196422..1198077 (-) 1656 WP_022550239.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  VIBNI_RS05360 (VIBNI_A1114) - 1198203..1198715 (-) 513 WP_022550240.1 hypothetical protein -
  VIBNI_RS05365 (VIBNI_A1115) - 1199071..1199994 (-) 924 WP_004402627.1 HDOD domain-containing protein -
  VIBNI_RS05370 (VIBNI_A1116) tfoX 1200407..1200994 (+) 588 WP_004402628.1 TfoX/Sxy family DNA transformation protein Regulator
  VIBNI_RS05375 (VIBNI_A1117) - 1201742..1202767 (+) 1026 WP_004402631.1 ABC transporter permease subunit -
  VIBNI_RS05380 (VIBNI_A1118) - 1202770..1203813 (+) 1044 WP_022550241.1 ABC transporter permease subunit -
  VIBNI_RS05385 (VIBNI_A1119) - 1203840..1205666 (+) 1827 WP_022550242.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22602.00 Da        Isoelectric Point: 8.9874

>NTDB_id=62569 VIBNI_RS05370 WP_004402628.1 1200407..1200994(+) (tfoX) [Vibrio nigripulchritudo]
MKESMFYDFVDQFGSYQKRSMFGGIGLFNEGAMYALLTNETIFIRGGGNLDKKLTDLGCEKYKHVKKQTTAIVNYYDITD
LFDSQHEELESIVRASINFSKQQRAFQKSKDSRRLRDLPNMQLTLERMVKKSGIDDVSTFMRLGPVDVFRRVKQTYGGEV
DIRLLWKFAGAVKGCHWKLIQEQQKEELLALCQEV

Nucleotide


Download         Length: 588 bp        

>NTDB_id=62569 VIBNI_RS05370 WP_004402628.1 1200407..1200994(+) (tfoX) [Vibrio nigripulchritudo]
ATGAAGGAATCTATGTTCTATGATTTTGTTGATCAGTTTGGCAGTTATCAAAAGCGATCAATGTTTGGTGGAATTGGCTT
ATTCAATGAAGGAGCGATGTACGCACTACTGACTAATGAAACAATCTTTATTCGTGGCGGTGGTAACCTAGACAAAAAAT
TGACAGATCTCGGATGCGAAAAATATAAGCATGTGAAGAAGCAAACAACAGCTATCGTTAATTATTACGATATTACTGAT
TTGTTCGATTCACAGCATGAAGAGCTTGAAAGCATCGTCCGTGCATCTATCAACTTTTCAAAGCAGCAAAGGGCTTTTCA
AAAGTCTAAAGACAGCAGAAGACTGCGTGATCTTCCAAATATGCAGTTGACTCTGGAACGTATGGTTAAGAAGTCTGGTA
TTGATGATGTTAGTACTTTCATGCGTTTAGGTCCTGTTGATGTGTTTAGACGCGTGAAGCAGACTTACGGTGGCGAAGTT
GATATTCGCTTACTTTGGAAGTTTGCTGGTGCTGTGAAAGGTTGCCATTGGAAACTGATTCAAGAGCAGCAAAAGGAAGA
ATTGCTCGCTTTGTGTCAGGAAGTATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(10-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

64.948

99.487

0.646
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

64.948

99.487

0.646
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

64.948

99.487

0.646
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

64.948

99.487

0.646
  tfoX Vibrio cholerae strain A1552

64.948

99.487

0.646
  tfoX Vibrio campbellii strain DS40M4

62.176

98.974

0.615
  tfoX Vibrio parahaemolyticus RIMD 2210633

62.176

98.974

0.615
  tfoX Aliivibrio fischeri ES114

56.684

95.897

0.544

Multiple sequence alignment