Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NYS59_RS03755 Genome accession   NZ_CP103789
Coordinates   780520..781017 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 2718     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 775520..786017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYS59_RS03740 bfr 775528..775992 (+) 465 WP_003093668.1 bacterioferritin -
  NYS59_RS03745 uvrA 776064..778901 (-) 2838 WP_128652515.1 excinuclease ABC subunit UvrA Machinery gene
  NYS59_RS03750 - 779115..780503 (+) 1389 WP_009316331.1 MFS transporter -
  NYS59_RS03755 ssb 780520..781017 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  NYS59_RS03760 pchA 781106..782536 (-) 1431 WP_128652514.1 isochorismate synthase PchA -
  NYS59_RS03765 pchB 782533..782838 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  NYS59_RS03770 pchC 782838..783593 (-) 756 WP_023091007.1 pyochelin biosynthesis editing thioesterase PchC -
  NYS59_RS03775 pchD 783590..785233 (-) 1644 WP_128652513.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=625405 NYS59_RS03755 WP_003114685.1 780520..781017(+) (ssb) [Pseudomonas aeruginosa strain 2718]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=625405 NYS59_RS03755 WP_003114685.1 780520..781017(+) (ssb) [Pseudomonas aeruginosa strain 2718]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515