Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FNL60_RS08025 Genome accession   NZ_AP019720
Coordinates   1583741..1584406 (-) Length   221 a.a.
NCBI ID   WP_002270131.1    Uniprot ID   -
Organism   Streptococcus mutans strain NBRC 13955     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578741..1589406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL60_RS08005 (SM3g_14880) - 1579461..1580096 (+) 636 WP_002263021.1 hypothetical protein -
  FNL60_RS08010 (SM3g_14890) - 1580176..1581876 (-) 1701 WP_002263022.1 zinc ribbon domain-containing protein -
  FNL60_RS08015 (SM3g_14900) - 1581896..1582990 (-) 1095 WP_002266342.1 hypothetical protein -
  FNL60_RS08020 (SM3g_14910) hpf 1583114..1583662 (-) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FNL60_RS08025 (SM3g_14920) comFC/cflB 1583741..1584406 (-) 666 WP_002270131.1 ComF family protein Machinery gene
  FNL60_RS08030 (SM3g_14930) comFA/cflA 1584403..1585704 (-) 1302 WP_002279927.1 DEAD/DEAH box helicase Machinery gene
  FNL60_RS08035 (SM3g_14940) - 1585777..1586406 (+) 630 WP_002263027.1 YigZ family protein -
  FNL60_RS08040 (SM3g_14950) cysK 1586497..1587423 (+) 927 WP_002279926.1 cysteine synthase A -
  FNL60_RS08045 (SM3g_14960) - 1587757..1588848 (-) 1092 WP_002263029.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26031.08 Da        Isoelectric Point: 8.9825

>NTDB_id=62516 FNL60_RS08025 WP_002270131.1 1583741..1584406(-) (comFC/cflB) [Streptococcus mutans strain NBRC 13955]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=62516 FNL60_RS08025 WP_002270131.1 1583741..1584406(-) (comFC/cflB) [Streptococcus mutans strain NBRC 13955]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTCTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439

Multiple sequence alignment