Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   FNL60_RS07800 Genome accession   NZ_AP019720
Coordinates   1541404..1542060 (+) Length   218 a.a.
NCBI ID   WP_002280342.1    Uniprot ID   -
Organism   Streptococcus mutans strain NBRC 13955     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1536404..1547060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL60_RS07765 (SM3g_14410) - 1536640..1536894 (-) 255 WP_002262064.1 DUF3165 family protein -
  FNL60_RS07770 (SM3g_14420) typA 1536923..1538767 (-) 1845 WP_002262063.1 translational GTPase TypA -
  FNL60_RS07780 (SM3g_14430) - 1539000..1539389 (-) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  FNL60_RS07785 (SM3g_14440) - 1539399..1540370 (-) 972 WP_002268147.1 ROK family glucokinase -
  FNL60_RS07790 (SM3g_14450) - 1540363..1540569 (-) 207 WP_002262060.1 YqgQ family protein -
  FNL60_RS07795 (SM3g_14460) dpr 1540776..1541303 (-) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  FNL60_RS07800 (SM3g_14470) cclA/cilC 1541404..1542060 (+) 657 WP_002280342.1 prepilin peptidase Machinery gene
  FNL60_RS07805 (SM3g_14480) trpA 1542297..1543079 (-) 783 WP_002280343.1 tryptophan synthase subunit alpha -
  FNL60_RS07810 (SM3g_14490) trpB 1543083..1544294 (-) 1212 WP_002267347.1 tryptophan synthase subunit beta -
  FNL60_RS07815 (SM3g_14500) - 1544291..1544872 (-) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  FNL60_RS07820 (SM3g_14510) trpC 1544859..1545626 (-) 768 WP_002267346.1 indole-3-glycerol phosphate synthase TrpC -
  FNL60_RS07825 (SM3g_14520) trpD 1545619..1546626 (-) 1008 WP_002262053.1 anthranilate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24845.01 Da        Isoelectric Point: 8.3710

>NTDB_id=62513 FNL60_RS07800 WP_002280342.1 1541404..1542060(+) (cclA/cilC) [Streptococcus mutans strain NBRC 13955]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNNCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFL
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKHKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=62513 FNL60_RS07800 WP_002280342.1 1541404..1542060(+) (cclA/cilC) [Streptococcus mutans strain NBRC 13955]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAATTGCTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTAATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCCTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGCACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

43.256

98.624

0.427

  cclA/cilC Streptococcus mitis NCTC 12261

42.326

98.624

0.417

  cclA/cilC Streptococcus pneumoniae Rx1

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae D39

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae R6

42.723

97.706

0.417

  cclA/cilC Streptococcus pneumoniae TIGR4

41.784

97.706

0.408