Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LMZ02_RS05295 Genome accession   NZ_CP086393
Coordinates   1156348..1156845 (-) Length   165 a.a.
NCBI ID   WP_036618248.1    Uniprot ID   -
Organism   Paenibacillus macerans strain I6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1151348..1161845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMZ02_RS05275 (LMZ02_05270) - 1151635..1152606 (-) 972 WP_036618254.1 ABC transporter permease -
  LMZ02_RS05280 (LMZ02_05275) - 1152722..1154455 (-) 1734 WP_036618252.1 peptide-binding protein -
  LMZ02_RS05285 (LMZ02_05280) - 1154925..1155692 (-) 768 WP_051985149.1 carbohydrate-binding protein -
  LMZ02_RS05290 (LMZ02_05285) rpsR 1156057..1156326 (-) 270 WP_082207605.1 30S ribosomal protein S18 -
  LMZ02_RS05295 (LMZ02_05290) ssbA 1156348..1156845 (-) 498 WP_036618248.1 single-stranded DNA-binding protein Machinery gene
  LMZ02_RS05300 (LMZ02_05295) rpsF 1156889..1157173 (-) 285 WP_036618247.1 30S ribosomal protein S6 -
  LMZ02_RS05305 (LMZ02_05300) - 1157334..1158599 (-) 1266 WP_063836287.1 MFS transporter -
  LMZ02_RS05310 (LMZ02_05305) - 1158596..1160182 (-) 1587 WP_036618245.1 GH3 family domain-containing protein -
  LMZ02_RS05315 (LMZ02_05310) - 1160198..1160785 (-) 588 WP_155619211.1 TetR/AcrR family transcriptional regulator -
  LMZ02_RS05320 (LMZ02_05315) - 1160942..1161139 (+) 198 WP_036618241.1 YjzC family protein -
  LMZ02_RS05325 (LMZ02_05320) - 1161669..1161833 (+) 165 WP_036618239.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17975.73 Da        Isoelectric Point: 4.7158

>NTDB_id=624696 LMZ02_RS05295 WP_036618248.1 1156348..1156845(-) (ssbA) [Paenibacillus macerans strain I6]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTIAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGRRVYVTEVIADNVRFLESNREGGSGGGGGMREESPFGGGGSGNGGNNRGSGGFSRSNQDDPFSDDGKPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=624696 LMZ02_RS05295 WP_036618248.1 1156348..1156845(-) (ssbA) [Paenibacillus macerans strain I6]
TTGTTGAACCGTGTCATTCTAATCGGACGTCTTACCCGGGATCCCGAGCTTCGCTATACGCCTTCCGGCGTGGCGGTGAC
TCAGTTTACGATTGCGGTGGACAGACCGTTCACCTCGCAGGGTGGAGAACGGGAAGCGGATTTCATTCCGGTGGTCACCT
GGAGGCAGCTCGCTGAGACTTGCGCGAACTATTTGCGGAAAGGACGGCTTACCGCGGTGGAAGGACGTATTCAAGTACGG
AATTACGAAAATAACGAAGGCCGGCGTGTGTACGTCACCGAAGTTATTGCCGACAATGTCCGTTTCTTGGAATCGAACCG
CGAAGGCGGCTCAGGTGGCGGAGGCGGCATGCGGGAGGAGTCTCCATTCGGAGGCGGTGGCAGCGGCAACGGTGGCAACA
ACCGTGGCAGCGGCGGATTCTCGCGCAGCAATCAAGATGATCCTTTCTCCGATGACGGGAAACCGATCGACATTTCGGAT
GACGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.303

100

0.618
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.515
  ssb Vibrio cholerae strain A1552

33.889

100

0.37
  ssb Neisseria meningitidis MC58

32.258

100

0.364