Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LLE50_RS07520 Genome accession   NZ_CP086369
Coordinates   1651542..1652087 (+) Length   181 a.a.
NCBI ID   WP_103942327.1    Uniprot ID   -
Organism   Pectobacterium versatile strain A73-S18-O15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1652155..1653471 1651542..1652087 flank 68


Gene organization within MGE regions


Location: 1651542..1653471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE50_RS07520 (LLE50_07515) ssb 1651542..1652087 (+) 546 WP_103942327.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LLE50_RS07525 (LLE50_07520) - 1652155..1653471 (-) 1317 WP_130622415.1 IS4 family transposase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19175.13 Da        Isoelectric Point: 5.2456

>NTDB_id=624534 LLE50_RS07520 WP_103942327.1 1651542..1652087(+) (ssb) [Pectobacterium versatile strain A73-S18-O15]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQSGGAPAGGGSAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=624534 LLE50_RS07520 WP_103942327.1 1651542..1652087(+) (ssb) [Pectobacterium versatile strain A73-S18-O15]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCAGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTCGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTAGTTGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGCCAGAGCGGCGGCGCACCAGCAGGCGGTGGCAGTGCAGGTGGCGGCCAGCAAC
AAGGCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAATCTCAGCAGCGCCCGGCA
CAGAACAGCGCTCCAGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.597
  ssb Neisseria meningitidis MC58

46.927

98.895

0.464
  ssb Neisseria gonorrhoeae MS11

46.927

98.895

0.464