Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LMD38_RS26350 Genome accession   NZ_CP086328
Coordinates   5108168..5108680 (+) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus pacificus strain anQ-h4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5103168..5113680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS26320 (LMD38_26320) spo0J 5103616..5104467 (+) 852 WP_001051838.1 stage 0 sporulation protein Spo0J -
  LMD38_RS26325 (LMD38_26325) yyaC 5104488..5105084 (-) 597 WP_001020717.1 spore protease YyaC -
  LMD38_RS26330 (LMD38_26330) - 5105344..5106225 (+) 882 WP_000365102.1 mechanosensitive ion channel family protein -
  LMD38_RS26335 (LMD38_26335) - 5106246..5106443 (+) 198 WP_000436051.1 DUF951 domain-containing protein -
  LMD38_RS26340 (LMD38_26340) ychF 5106559..5107659 (+) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  LMD38_RS26345 (LMD38_26345) rpsF 5107851..5108141 (+) 291 WP_001233778.1 30S ribosomal protein S6 -
  LMD38_RS26350 (LMD38_26350) ssbA 5108168..5108680 (+) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  LMD38_RS26355 (LMD38_26355) rpsR 5108726..5108959 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  LMD38_RS26360 (LMD38_26360) - 5109094..5109975 (+) 882 WP_074567402.1 YybS family protein -
  LMD38_RS26365 (LMD38_26365) - 5110054..5112027 (+) 1974 WP_001113898.1 DHH family phosphoesterase -
  LMD38_RS26370 (LMD38_26370) rplI 5112024..5112470 (+) 447 WP_000864231.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=624332 LMD38_RS26350 WP_000981966.1 5108168..5108680(+) (ssbA) [Bacillus pacificus strain anQ-h4]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=624332 LMD38_RS26350 WP_000981966.1 5108168..5108680(+) (ssbA) [Bacillus pacificus strain anQ-h4]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGCGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394