Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5T31_RS20855 Genome accession   NZ_CP103694
Coordinates   4260701..4261237 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ST12468     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4255701..4266237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T31_RS20835 (M5T31_20835) soxR 4257429..4257893 (-) 465 WP_122647565.1 redox-sensitive transcriptional activator SoxR -
  M5T31_RS20840 (M5T31_20840) soxS 4257979..4258302 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  M5T31_RS20845 (M5T31_20845) pdeC 4258305..4259891 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  M5T31_RS20850 (M5T31_20850) yjcB 4260321..4260602 (+) 282 WP_001295689.1 YjcB family protein -
  M5T31_RS20855 (M5T31_20855) ssb 4260701..4261237 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M5T31_RS20860 (M5T31_20860) uvrA 4261491..4264313 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  M5T31_RS20865 (M5T31_20865) yjbR 4264348..4264704 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  M5T31_RS20870 (M5T31_20870) yjbQ 4264708..4265124 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M5T31_RS20875 (M5T31_20875) aphA 4265235..4265948 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=624323 M5T31_RS20855 WP_000168305.1 4260701..4261237(-) (ssb) [Escherichia coli strain ST12468]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=624323 M5T31_RS20855 WP_000168305.1 4260701..4261237(-) (ssb) [Escherichia coli strain ST12468]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489