Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LL668_RS02460 Genome accession   NZ_CP086257
Coordinates   564857..565378 (+) Length   173 a.a.
NCBI ID   WP_109912589.1    Uniprot ID   -
Organism   Providencia rettgeri strain KM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 559857..570378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL668_RS02450 (LL668_02450) - 560020..561216 (+) 1197 WP_115166560.1 aromatic amino acid transaminase -
  LL668_RS02455 (LL668_02455) uvrA 561296..564130 (-) 2835 WP_109912590.1 excinuclease ABC subunit UvrA -
  LL668_RS02460 (LL668_02460) ssb 564857..565378 (+) 522 WP_109912589.1 single-stranded DNA-binding protein Machinery gene
  LL668_RS02465 (LL668_02465) - 565653..566060 (-) 408 WP_117163030.1 helix-turn-helix domain-containing protein -
  LL668_RS02470 (LL668_02470) - 566300..567472 (-) 1173 WP_228367414.1 MFS transporter -
  LL668_RS02475 (LL668_02475) ivbL 567806..567895 (+) 90 WP_196719222.1 ilvB operon leader peptide IvbL -
  LL668_RS02480 (LL668_02480) ilvB 567999..569696 (+) 1698 WP_228367684.1 acetolactate synthase large subunit -
  LL668_RS02485 (LL668_02485) ilvN 569699..569983 (+) 285 WP_004914949.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18561.60 Da        Isoelectric Point: 4.9468

>NTDB_id=624070 LL668_RS02460 WP_109912589.1 564857..565378(+) (ssb) [Providencia rettgeri strain KM4]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGQGGWGQPQQPQAAQQFSGGGAPAARPSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=624070 LL668_RS02460 WP_109912589.1 564857..565378(+) (ssb) [Providencia rettgeri strain KM4]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGAGTCGTTATTTTCGGCAAACTTGCTGAAGTAGCAGGTGAATACCTAAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGTTATACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGTTAGGTGGCCGTGGTGGTGATGCACCATCACAAGGTCAAGGCGGTCAAGGTGGTTGGGGCCAAC
CACAGCAGCCTCAAGCGGCACAACAATTCAGTGGTGGTGGAGCGCCAGCCGCACGCCCATCAGCACCTGCACCACAAACC
AATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.613
  ssb Neisseria meningitidis MC58

46.927

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.474