Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LLY41_RS01050 Genome accession   NZ_CP086235
Coordinates   195423..195935 (+) Length   170 a.a.
NCBI ID   WP_076262941.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 190423..200935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS01030 (LLY41_01030) - 191143..191340 (+) 198 WP_061793278.1 DUF951 domain-containing protein -
  LLY41_RS01035 (LLY41_01035) - 191368..193362 (+) 1995 WP_304586680.1 molybdopterin-dependent oxidoreductase -
  LLY41_RS01040 (LLY41_01040) ychF 193526..194626 (+) 1101 WP_095245557.1 redox-regulated ATPase YchF -
  LLY41_RS01045 (LLY41_01045) rpsF 195099..195386 (+) 288 WP_076262938.1 30S ribosomal protein S6 -
  LLY41_RS01050 (LLY41_01050) ssbA 195423..195935 (+) 513 WP_076262941.1 single-stranded DNA-binding protein Machinery gene
  LLY41_RS01055 (LLY41_01055) rpsR 195994..196233 (+) 240 WP_009332461.1 30S ribosomal protein S18 -
  LLY41_RS01060 (LLY41_01060) - 196435..197370 (+) 936 WP_304586681.1 YybS family protein -
  LLY41_RS01065 (LLY41_01065) - 197402..199375 (+) 1974 WP_095245560.1 DHH family phosphoesterase -
  LLY41_RS01070 (LLY41_01070) rplI 199372..199818 (+) 447 WP_035328283.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18862.60 Da        Isoelectric Point: 4.7827

>NTDB_id=623879 LLY41_RS01050 WP_076262941.1 195423..195935(+) (ssbA) [Cytobacillus firmus strain T8]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGGNPNYGGPKDQDFPFGNNSNQNQRQDNRNQGNYTRVDQDPFANDGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=623879 LLY41_RS01050 WP_076262941.1 195423..195935(+) (ssbA) [Cytobacillus firmus strain T8]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTGCGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTACTTTTACGAATCAGCAAGGTGAGCGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCAAATTTCCTTAAAAAAGGAAGTCTTGCAGGTGTAGATGGCCGGATTCAGTCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGCGTTTACGTGACAGAAGTCCAGGCTGAAAGTGTGCAATTCCTTGAGCCGAAGAA
TAGTTCTGGCGGCCAGGGCGGCGGTAATCCGAACTACGGCGGTCCAAAAGATCAGGATTTCCCATTTGGAAATAACAGCA
ATCAGAATCAACGCCAGGATAATCGTAATCAGGGCAACTATACTCGCGTGGATCAGGATCCATTCGCAAATGACGGCCAA
ATCGACATTTCTGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.348

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

55.114

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

35.393

100

0.371