Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LL975_RS00760 Genome accession   NZ_CP086198
Coordinates   144757..145275 (+) Length   172 a.a.
NCBI ID   WP_086043613.1    Uniprot ID   A0A1W7AER1
Organism   Macrococcoides canis strain KW0150     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 139757..150275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL975_RS00730 (LL975_00725) - 140151..140912 (+) 762 WP_086043619.1 ParA family protein -
  LL975_RS00735 (LL975_00730) - 140905..141768 (+) 864 WP_254254959.1 ParB/RepB/Spo0J family partition protein -
  LL975_RS00740 (LL975_00735) - 141769..142656 (+) 888 WP_254254958.1 mechanosensitive ion channel family protein -
  LL975_RS00745 (LL975_00740) - 142658..142846 (+) 189 WP_086043616.1 DUF951 domain-containing protein -
  LL975_RS00750 (LL975_00745) ychF 142865..143965 (+) 1101 WP_086043615.1 redox-regulated ATPase YchF -
  LL975_RS00755 (LL975_00750) rpsF 144442..144732 (+) 291 WP_086043690.1 30S ribosomal protein S6 -
  LL975_RS00760 (LL975_00755) ssbA 144757..145275 (+) 519 WP_086043613.1 single-stranded DNA-binding protein Machinery gene
  LL975_RS00765 (LL975_00760) rpsR 145308..145550 (+) 243 WP_041636240.1 30S ribosomal protein S18 -
  LL975_RS00770 (LL975_00765) - 145734..146291 (+) 558 WP_254254957.1 YfbU family protein -
  LL975_RS00775 (LL975_00770) - 146288..146902 (-) 615 WP_254254956.1 GNAT family N-acetyltransferase -
  LL975_RS00780 (LL975_00775) - 147005..147991 (-) 987 WP_086043610.1 DUF2382 domain-containing protein -
  LL975_RS00785 (LL975_00780) xpt 148495..149079 (+) 585 WP_236366076.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19028.60 Da        Isoelectric Point: 4.8835

>NTDB_id=623581 LL975_RS00760 WP_086043613.1 144757..145275(+) (ssbA) [Macrococcoides canis strain KW0150]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGSYGQTQGQNQNYQASNNQQSNTSAPSNNPFANAT
GPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=623581 LL975_RS00760 WP_086043613.1 144757..145275(+) (ssbA) [Macrococcoides canis strain KW0150]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACAAATGCCCAAGGAGAACGTCAGGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCTGAAAATGTCAACAATTTCTTGCACAAAGGTAGCTTAGCTGGGGTTGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGACGCAGAGTATATGTAACAGAAGTGGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAATCCGTCTGATGACTATTCAAGCTATGACCAAGGTAGTTATGGTCAGACGCAAGGTC
AGAATCAAAATTATCAAGCATCAAACAATCAACAATCAAATACATCAGCACCATCAAATAACCCATTTGCGAATGCAACA
GGGCCAATTGATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W7AER1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.669

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

53.107

100

0.547
  ssb Vibrio cholerae strain A1552

34.759

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.628

0.366