Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LL925_RS06135 Genome accession   NZ_CP086195
Coordinates   1273934..1274992 (+) Length   352 a.a.
NCBI ID   WP_011407795.1    Uniprot ID   A0A854CPF1
Organism   Xanthomonas oryzae strain JS158-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1268934..1279992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL925_RS06125 (LL925_06125) - 1270329..1270979 (-) 651 WP_011407794.1 hypothetical protein -
  LL925_RS06130 (LL925_06130) - 1271289..1273718 (-) 2430 WP_011257992.1 penicillin-binding protein 1A -
  LL925_RS06135 (LL925_06135) comM 1273934..1274992 (+) 1059 WP_011407795.1 pilus assembly protein PilM Machinery gene
  LL925_RS06140 (LL925_06140) - 1274992..1275750 (+) 759 WP_011257994.1 PilN domain-containing protein -
  LL925_RS06145 (LL925_06145) - 1275747..1276412 (+) 666 WP_011257995.1 type 4a pilus biogenesis protein PilO -
  LL925_RS06150 (LL925_06150) - 1276409..1276942 (+) 534 WP_011257996.1 pilus assembly protein PilP -
  LL925_RS06155 (LL925_06155) - 1276962..1278911 (+) 1950 WP_011407796.1 type IV pilus secretin PilQ family protein -
  LL925_RS06160 (LL925_06160) - 1278982..1279779 (-) 798 WP_274392128.1 IS5 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37712.41 Da        Isoelectric Point: 4.3924

>NTDB_id=623527 LL925_RS06135 WP_011407795.1 1273934..1274992(+) (comM) [Xanthomonas oryzae strain JS158-2]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=623527 LL925_RS06135 WP_011407795.1 1273934..1274992(+) (comM) [Xanthomonas oryzae strain JS158-2]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854CPF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  pilM Acinetobacter baumannii D1279779

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477