Detailed information NTG0623452

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LL930_RS11635
• Genome accession: NZ_CP086188
• Coordinates: 2429699..2430757 (+)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae strain PXO79
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2424699..2435757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL930_RS11620 (LL930_11610)	-	2425036..2425686 (-)	651	WP_011407794.1	hypothetical protein	-
LL930_RS11625 (LL930_11615)	-	2426031..2426986 (+)	956	Protein_2219	IS30-like element IS1112b family transposase	-
LL930_RS11630 (LL930_11620)	-	2427054..2429483 (-)	2430	WP_011257992.1	penicillin-binding protein 1A	-
LL930_RS11635 (LL930_11625)	comM	2429699..2430757 (+)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
LL930_RS11640 (LL930_11630)	-	2430757..2431515 (+)	759	WP_044757059.1	PilN domain-containing protein	-
LL930_RS11645 (LL930_11635)	-	2431512..2432177 (+)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
LL930_RS11650 (LL930_11640)	-	2432174..2432707 (+)	534	WP_011257996.1	pilus assembly protein PilP	-
LL930_RS11655 (LL930_11645)	-	2432727..2434676 (+)	1950	WP_011407796.1	type IV pilus secretin PilQ	-
LL930_RS11660 (LL930_11650)	-	2435274..2435275 (-)	2	WP_094187728.1	IS5 family transposase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=623452 LL930_RS11635 WP_011407795.1 2429699..2430757(+) (comM) [Xanthomonas oryzae strain PXO79]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=623452 LL930_RS11635 WP_011407795.1 2429699..2430757(+) (comM) [Xanthomonas oryzae strain PXO79]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477