Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LL920_RS15970 Genome accession   NZ_CP086185
Coordinates   3405346..3406404 (+) Length   352 a.a.
NCBI ID   WP_069964966.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain PXO112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3400346..3411404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL920_RS15955 (LL920_15925) - 3400683..3401333 (-) 651 WP_011407794.1 hypothetical protein -
  LL920_RS15960 (LL920_15930) - 3401678..3402633 (+) 956 Protein_3055 IS30-like element IS1112b family transposase -
  LL920_RS15965 (LL920_15935) - 3402701..3405130 (-) 2430 WP_011257992.1 penicillin-binding protein 1A -
  LL920_RS15970 (LL920_15940) comM 3405346..3406404 (+) 1059 WP_069964966.1 pilus assembly protein PilM Machinery gene
  LL920_RS15975 (LL920_15945) - 3406404..3407162 (+) 759 WP_044757059.1 PilN domain-containing protein -
  LL920_RS15980 (LL920_15950) - 3407159..3407824 (+) 666 WP_011257995.1 type 4a pilus biogenesis protein PilO -
  LL920_RS15985 (LL920_15955) - 3407821..3408354 (+) 534 WP_011257996.1 pilus assembly protein PilP -
  LL920_RS15990 (LL920_15960) - 3408374..3410323 (+) 1950 WP_011407796.1 type IV pilus secretin PilQ -
  LL920_RS15995 (LL920_15965) - 3410921..3410922 (-) 2 WP_094187728.1 IS5 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37726.44 Da        Isoelectric Point: 4.3924

>NTDB_id=623434 LL920_RS15970 WP_069964966.1 3405346..3406404(+) (comM) [Xanthomonas oryzae strain PXO112]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYTREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=623434 LL920_RS15970 WP_069964966.1 3405346..3406404(+) (comM) [Xanthomonas oryzae strain PXO112]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATACCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474