Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   LL146_RS07070 Genome accession   NZ_CP086172
Coordinates   1396476..1396787 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain 6-897-19     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1391476..1401787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL146_RS07050 (LL146_07050) ctsE 1392345..1393904 (-) 1560 WP_013463615.1 GspE/PulE family protein Machinery gene
  LL146_RS07055 (LL146_07055) ctsX 1393894..1394481 (-) 588 WP_002851370.1 membrane protein Machinery gene
  LL146_RS07060 (LL146_07060) ctsP 1394485..1395093 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  LL146_RS07065 (LL146_07065) ctsD 1395086..1396498 (-) 1413 WP_180819945.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LL146_RS07070 (LL146_07070) ctsR 1396476..1396787 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  LL146_RS07075 (LL146_07075) nifJ 1396811..1400371 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  LL146_RS07080 (LL146_07080) - 1400464..1401107 (-) 644 Protein_1381 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=623281 LL146_RS07070 WP_002855438.1 1396476..1396787(-) (ctsR) [Campylobacter jejuni strain 6-897-19]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=623281 LL146_RS07070 WP_002855438.1 1396476..1396787(-) (ctsR) [Campylobacter jejuni strain 6-897-19]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1