Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   LL138_RS05500 Genome accession   NZ_CP086160
Coordinates   1068610..1068912 (+) Length   100 a.a.
NCBI ID   WP_002875928.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SHI5328     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1063610..1073912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL138_RS05475 (LL138_05475) rpsR 1063973..1064233 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  LL138_RS05480 (LL138_05480) lon 1064293..1066668 (-) 2376 WP_002852988.1 endopeptidase La -
  LL138_RS05485 (LL138_05485) - 1066685..1067332 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  LL138_RS05490 (LL138_05490) fliW 1067493..1067882 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  LL138_RS05495 (LL138_05495) proC 1067882..1068613 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  LL138_RS05500 (LL138_05500) ctsT 1068610..1068912 (+) 303 WP_002875928.1 hypothetical protein Machinery gene
  LL138_RS05505 (LL138_05505) - 1068909..1069571 (+) 663 WP_002858296.1 hypothetical protein -
  LL138_RS05510 (LL138_05510) - 1069568..1070020 (+) 453 WP_002859148.1 hypothetical protein -
  LL138_RS05515 (LL138_05515) hemD 1070017..1070646 (-) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  LL138_RS05520 (LL138_05520) thiE 1070624..1071256 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  LL138_RS05525 (LL138_05525) thiD 1071246..1072058 (-) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LL138_RS05530 (LL138_05530) - 1072055..1072741 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  LL138_RS05535 (LL138_05535) - 1072738..1073499 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12161.32 Da        Isoelectric Point: 9.0653

>NTDB_id=622969 LL138_RS05500 WP_002875928.1 1068610..1068912(+) (ctsT) [Campylobacter jejuni strain SHI5328]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFKRLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=622969 LL138_RS05500 WP_002875928.1 1068610..1068912(+) (ctsT) [Campylobacter jejuni strain SHI5328]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTAAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98