Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LL046_RS11995 Genome accession   NZ_CP086088
Coordinates   2335499..2335999 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2330499..2340999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS11970 (LL046_11920) gnd 2331561..2332466 (-) 906 WP_026138974.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  LL046_RS11975 (LL046_11925) - 2332831..2333679 (+) 849 WP_012898662.1 MurR/RpiR family transcriptional regulator -
  LL046_RS11980 (LL046_11930) - 2333717..2334025 (+) 309 WP_017865196.1 DUF960 domain-containing protein -
  LL046_RS11985 (LL046_11935) - 2334107..2334880 (-) 774 WP_003131951.1 metallophosphoesterase -
  LL046_RS11990 (LL046_11940) rpsR 2335080..2335325 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  LL046_RS11995 (LL046_11945) ssb 2335499..2335999 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  LL046_RS12000 (LL046_11950) rpsF 2336029..2336322 (-) 294 WP_017865198.1 30S ribosomal protein S6 -
  LL046_RS12005 (LL046_11955) - 2336514..2337368 (-) 855 WP_058210701.1 undecaprenyl-diphosphate phosphatase -
  LL046_RS12010 (LL046_11960) - 2337891..2339357 (+) 1467 WP_017865200.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=622459 LL046_RS11995 WP_003131953.1 2335499..2335999(-) (ssb) [Lactococcus lactis subsp. lactis strain EIP13A]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=622459 LL046_RS11995 WP_003131953.1 2335499..2335999(-) (ssb) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTTATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373