Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LL046_RS08850 Genome accession   NZ_CP086088
Coordinates   1766422..1767411 (-) Length   329 a.a.
NCBI ID   WP_211752612.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain EIP13A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1761422..1772411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL046_RS08835 (LL046_08815) - 1762788..1763714 (-) 927 WP_017864884.1 peptidyl-prolyl cis-trans isomerase -
  LL046_RS08840 (LL046_08820) - 1763868..1764551 (-) 684 WP_010906108.1 O-methyltransferase -
  LL046_RS08845 (LL046_08825) pepF 1764554..1766359 (-) 1806 WP_259771352.1 oligoendopeptidase F Regulator
  LL046_RS08850 (LL046_08830) coiA 1766422..1767411 (-) 990 WP_211752612.1 competence protein CoiA Machinery gene
  LL046_RS08855 (LL046_08835) - 1767485..1768570 (-) 1086 WP_017864887.1 YdcF family protein -
  LL046_RS08860 (LL046_08840) - 1768732..1769580 (-) 849 WP_058210771.1 alpha/beta hydrolase -
  LL046_RS08865 (LL046_08845) - 1769772..1771193 (-) 1422 WP_012898314.1 NCS2 family permease -
  LL046_RS08870 (LL046_08850) - 1771500..1772336 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39379.07 Da        Isoelectric Point: 8.8020

>NTDB_id=622435 LL046_RS08850 WP_211752612.1 1766422..1767411(-) (coiA) [Lactococcus lactis subsp. lactis strain EIP13A]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSEKR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKQNINLYYENFLINFQQNSFKAVCPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=622435 LL046_RS08850 WP_211752612.1 1766422..1767411(-) (coiA) [Lactococcus lactis subsp. lactis strain EIP13A]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAAAAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TTTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTGTCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.54

99.088

0.739
  coiA Streptococcus mitis NCTC 12261

43.168

97.872

0.422
  coiA Streptococcus pneumoniae TIGR4

42.857

97.872

0.419
  coiA Streptococcus pneumoniae Rx1

42.857

97.872

0.419
  coiA Streptococcus pneumoniae D39

42.857

97.872

0.419
  coiA Streptococcus pneumoniae R6

42.857

97.872

0.419