Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LK685_RS08575 Genome accession   NZ_CP086061
Coordinates   1644901..1645971 (+) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus sp. BC1-43     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1639901..1650971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS08545 (LK685_08550) - 1640095..1640340 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  LK685_RS08550 (LK685_08555) mgsR 1640572..1640952 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  LK685_RS08560 (LK685_08565) rsbRD 1641176..1642012 (+) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -
  LK685_RS08565 (LK685_08570) - 1642065..1643393 (-) 1329 WP_009967730.1 hemolysin family protein -
  LK685_RS08570 (LK685_08575) corA 1643536..1644489 (+) 954 WP_004399136.1 magnesium transporter CorA -
  LK685_RS08575 (LK685_08580) comGA 1644901..1645971 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  LK685_RS08580 (LK685_08585) comGB 1645958..1646995 (+) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  LK685_RS08585 (LK685_08590) comGC 1647009..1647305 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  LK685_RS08590 (LK685_08595) comGD 1647295..1647726 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  LK685_RS08595 (LK685_08600) comGE 1647710..1648057 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  LK685_RS08600 (LK685_08605) comGF 1648083..1648466 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  LK685_RS08605 (LK685_08610) comGG 1648467..1648841 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  LK685_RS08610 (LK685_08615) - 1648912..1649091 (+) 180 WP_014480252.1 YqzE family protein -
  LK685_RS08615 (LK685_08620) - 1649133..1649459 (-) 327 WP_024573388.1 YqzG/YhdC family protein -
  LK685_RS08620 (LK685_08625) tapA 1649731..1650492 (+) 762 WP_229762707.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=622172 LK685_RS08575 WP_004399124.1 1644901..1645971(+) (comGA) [Bacillus sp. BC1-43]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=622172 LK685_RS08575 WP_004399124.1 1644901..1645971(+) (comGA) [Bacillus sp. BC1-43]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1