Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LK685_RS08590 Genome accession   NZ_CP086061
Coordinates   1647295..1647726 (+) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus sp. BC1-43     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642295..1652726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS08570 (LK685_08575) corA 1643536..1644489 (+) 954 WP_004399136.1 magnesium transporter CorA -
  LK685_RS08575 (LK685_08580) comGA 1644901..1645971 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  LK685_RS08580 (LK685_08585) comGB 1645958..1646995 (+) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  LK685_RS08585 (LK685_08590) comGC 1647009..1647305 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  LK685_RS08590 (LK685_08595) comGD 1647295..1647726 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  LK685_RS08595 (LK685_08600) comGE 1647710..1648057 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  LK685_RS08600 (LK685_08605) comGF 1648083..1648466 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  LK685_RS08605 (LK685_08610) comGG 1648467..1648841 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  LK685_RS08610 (LK685_08615) - 1648912..1649091 (+) 180 WP_014480252.1 YqzE family protein -
  LK685_RS08615 (LK685_08620) - 1649133..1649459 (-) 327 WP_024573388.1 YqzG/YhdC family protein -
  LK685_RS08620 (LK685_08625) tapA 1649731..1650492 (+) 762 WP_229762707.1 amyloid fiber anchoring/assembly protein TapA -
  LK685_RS08625 (LK685_08630) - 1650476..1651048 (+) 573 WP_003246088.1 signal peptidase I -
  LK685_RS08630 (LK685_08635) tasA 1651112..1651897 (+) 786 WP_212058891.1 TasA family protein -
  LK685_RS08635 (LK685_08640) sinR 1651990..1652325 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  LK685_RS08640 (LK685_08645) sinI 1652359..1652532 (-) 174 WP_003230187.1 anti-repressor SinI family protein Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=622175 LK685_RS08590 WP_004398628.1 1647295..1647726(+) (comGD) [Bacillus sp. BC1-43]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=622175 LK685_RS08590 WP_004398628.1 1647295..1647726(+) (comGD) [Bacillus sp. BC1-43]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1