Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LK685_RS02940 Genome accession   NZ_CP086061
Coordinates   570065..570787 (+) Length   240 a.a.
NCBI ID   WP_229762647.1    Uniprot ID   -
Organism   Bacillus sp. BC1-43     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 565065..575787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS02915 (LK685_02920) degS 565376..566533 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LK685_RS02920 (LK685_02925) degU 566616..567305 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LK685_RS02925 (LK685_02930) - 567403..568248 (+) 846 WP_003244125.1 DegV family protein -
  LK685_RS02930 (LK685_02935) comFA 568354..569745 (+) 1392 WP_229762646.1 ATP-dependent helicase ComFA Machinery gene
  LK685_RS02935 (LK685_02940) comFB 569805..570101 (+) 297 WP_015483764.1 late competence protein ComFB -
  LK685_RS02940 (LK685_02945) comFC 570065..570787 (+) 723 WP_229762647.1 comF operon protein ComFC Machinery gene
  LK685_RS02945 (LK685_02950) - 570861..571280 (+) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  LK685_RS02950 (LK685_02955) flgM 571361..571627 (+) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  LK685_RS02955 (LK685_02960) flgN 571643..572125 (+) 483 WP_229762648.1 flagellar protein FlgN -
  LK685_RS02960 (LK685_02965) flgK 572144..573667 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  LK685_RS02965 (LK685_02970) flgL 573678..574574 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  LK685_RS02970 (LK685_02975) - 574621..575196 (+) 576 WP_015384781.1 DUF6470 family protein -
  LK685_RS02975 (LK685_02980) fliW 575217..575648 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27549.84 Da        Isoelectric Point: 9.3154

>NTDB_id=622150 LK685_RS02940 WP_229762647.1 570065..570787(+) (comFC) [Bacillus sp. BC1-43]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINVFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=622150 LK685_RS02940 WP_229762647.1 570065..570787(+) (comFC) [Bacillus sp. BC1-43]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGTATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988