Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LK685_RS02920 Genome accession   NZ_CP086061
Coordinates   566616..567305 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. BC1-43     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 561616..572305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS02900 (LK685_02905) - 562164..563240 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  LK685_RS02905 (LK685_02910) tagV 563313..564506 (-) 1194 WP_229762645.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  LK685_RS02910 (LK685_02915) - 564506..565159 (-) 654 WP_003227979.1 YigZ family protein -
  LK685_RS02915 (LK685_02920) degS 565376..566533 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LK685_RS02920 (LK685_02925) degU 566616..567305 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LK685_RS02925 (LK685_02930) - 567403..568248 (+) 846 WP_003244125.1 DegV family protein -
  LK685_RS02930 (LK685_02935) comFA 568354..569745 (+) 1392 WP_229762646.1 ATP-dependent helicase ComFA Machinery gene
  LK685_RS02935 (LK685_02940) comFB 569805..570101 (+) 297 WP_015483764.1 late competence protein ComFB -
  LK685_RS02940 (LK685_02945) comFC 570065..570787 (+) 723 WP_229762647.1 comF operon protein ComFC Machinery gene
  LK685_RS02945 (LK685_02950) - 570861..571280 (+) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  LK685_RS02950 (LK685_02955) flgM 571361..571627 (+) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  LK685_RS02955 (LK685_02960) flgN 571643..572125 (+) 483 WP_229762648.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=622148 LK685_RS02920 WP_003219701.1 566616..567305(+) (degU) [Bacillus sp. BC1-43]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=622148 LK685_RS02920 WP_003219701.1 566616..567305(+) (degU) [Bacillus sp. BC1-43]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1