Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LK685_RS02930 Genome accession   NZ_CP086061
Coordinates   568354..569745 (+) Length   463 a.a.
NCBI ID   WP_229762646.1    Uniprot ID   -
Organism   Bacillus sp. BC1-43     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563354..574745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS02910 (LK685_02915) - 564506..565159 (-) 654 WP_003227979.1 YigZ family protein -
  LK685_RS02915 (LK685_02920) degS 565376..566533 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LK685_RS02920 (LK685_02925) degU 566616..567305 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LK685_RS02925 (LK685_02930) - 567403..568248 (+) 846 WP_003244125.1 DegV family protein -
  LK685_RS02930 (LK685_02935) comFA 568354..569745 (+) 1392 WP_229762646.1 ATP-dependent helicase ComFA Machinery gene
  LK685_RS02935 (LK685_02940) comFB 569805..570101 (+) 297 WP_015483764.1 late competence protein ComFB -
  LK685_RS02940 (LK685_02945) comFC 570065..570787 (+) 723 WP_229762647.1 comF operon protein ComFC Machinery gene
  LK685_RS02945 (LK685_02950) - 570861..571280 (+) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  LK685_RS02950 (LK685_02955) flgM 571361..571627 (+) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  LK685_RS02955 (LK685_02960) flgN 571643..572125 (+) 483 WP_229762648.1 flagellar protein FlgN -
  LK685_RS02960 (LK685_02965) flgK 572144..573667 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  LK685_RS02965 (LK685_02970) flgL 573678..574574 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52559.67 Da        Isoelectric Point: 10.0317

>NTDB_id=622149 LK685_RS02930 WP_229762646.1 568354..569745(+) (comFA) [Bacillus sp. BC1-43]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=622149 LK685_RS02930 WP_229762646.1 568354..569745(+) (comFA) [Bacillus sp. BC1-43]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAATTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGAAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.568

100

0.996