Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LK685_RS00120 Genome accession   NZ_CP086061
Coordinates   22099..22617 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. BC1-43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17099..27617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK685_RS00100 (LK685_00100) - 18173..18379 (+) 207 WP_003226838.1 DUF951 family protein -
  LK685_RS00105 (LK685_00105) - 18430..20433 (+) 2004 WP_085185276.1 molybdopterin-dependent oxidoreductase -
  LK685_RS00110 (LK685_00110) ychF 20560..21660 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  LK685_RS00115 (LK685_00115) rpsF 21771..22058 (+) 288 WP_229762576.1 30S ribosomal protein S6 -
  LK685_RS00120 (LK685_00120) ssbA 22099..22617 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  LK685_RS00125 (LK685_00125) rpsR 22661..22900 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  LK685_RS00130 (LK685_00130) xth 22965..23723 (+) 759 WP_038429969.1 exodeoxyribonuclease III -
  LK685_RS00135 (LK685_00135) ccpB 23782..24717 (+) 936 WP_088327380.1 transcriptional regulator CcpB -
  LK685_RS00140 (LK685_00140) - 24773..25153 (+) 381 WP_229762577.1 VOC family protein -
  LK685_RS00145 (LK685_00145) - 25169..25723 (+) 555 WP_116315634.1 sugar O-acetyltransferase -
  LK685_RS00150 (LK685_00150) - 25757..27112 (-) 1356 WP_029318525.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=622139 LK685_RS00120 WP_003219228.1 22099..22617(+) (ssbA) [Bacillus sp. BC1-43]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=622139 LK685_RS00120 WP_003219228.1 22099..22617(+) (ssbA) [Bacillus sp. BC1-43]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378