Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LKW27_RS00540 Genome accession   NZ_CP086023
Coordinates   116970..117533 (-) Length   187 a.a.
NCBI ID   WP_011797714.1    Uniprot ID   A1TWB0
Organism   Paracidovorax citrulli strain HPP21-3-3B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 111970..122533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKW27_RS00505 (LKW27_00505) - 112121..113338 (+) 1218 WP_081436496.1 sensor domain-containing diguanylate cyclase -
  LKW27_RS00510 (LKW27_00510) - 113585..114511 (-) 927 WP_011797719.1 MBL fold metallo-hydrolase -
  LKW27_RS00515 (LKW27_00515) - 114591..114923 (+) 333 WP_011797718.1 metalloregulator ArsR/SmtB family transcription factor -
  LKW27_RS00520 (LKW27_00520) - 114929..115372 (+) 444 WP_011797717.1 hypothetical protein -
  LKW27_RS00525 (LKW27_00525) - 115398..115826 (+) 429 WP_046060725.1 DUF6691 family protein -
  LKW27_RS00530 (LKW27_00530) - 115855..116529 (+) 675 WP_017440023.1 DUF599 domain-containing protein -
  LKW27_RS00535 (LKW27_00535) - 116674..116838 (+) 165 WP_017440024.1 type I restriction enzyme endonuclease domain-containing protein -
  LKW27_RS00540 (LKW27_00540) ssb 116970..117533 (-) 564 WP_011797714.1 single-stranded DNA-binding protein Machinery gene
  LKW27_RS00545 (LKW27_00545) - 117752..119164 (+) 1413 WP_011797713.1 chloride channel protein -
  LKW27_RS00550 (LKW27_00550) - 119186..120376 (-) 1191 WP_041828325.1 MFS transporter -
  LKW27_RS00555 (LKW27_00555) - 120513..121328 (-) 816 WP_046060594.1 ubiquitin family protein -
  LKW27_RS00560 (LKW27_00560) cysC 121548..122177 (-) 630 WP_228193931.1 adenylyl-sulfate kinase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19838.84 Da        Isoelectric Point: 5.9505

>NTDB_id=622100 LKW27_RS00540 WP_011797714.1 116970..117533(-) (ssb) [Paracidovorax citrulli strain HPP21-3-3B]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQEKYTTEIRADTMQMLGSRQGMGGGQGGGGYDDGGYGGGDDGYGGGNSAPAPARRPAPQAAAPRPAPA
PRPAPAPAAQAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=622100 LKW27_RS00540 WP_011797714.1 116970..117533(-) (ssb) [Paracidovorax citrulli strain HPP21-3-3B]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTCGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTATGTCGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGTCGGGCCAGGAAAAGTACACGACGGAAATCCGGGCCGACACCATGCAGAT
GCTCGGCAGCCGCCAGGGCATGGGCGGCGGCCAGGGTGGCGGCGGCTATGACGACGGTGGCTACGGCGGTGGCGACGATG
GCTACGGCGGCGGCAACAGCGCCCCGGCGCCCGCGCGCCGCCCTGCGCCCCAGGCCGCCGCGCCGCGCCCGGCACCGGCT
CCCCGCCCTGCACCGGCCCCTGCGGCCCAGGCACCGCGTGCGGCGTCGGGGTTCGACGACATGGACGACGATATCCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1TWB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.495

100

0.545
  ssb Vibrio cholerae strain A1552

50.259

100

0.519
  ssb Neisseria gonorrhoeae MS11

46.277

100

0.465
  ssb Neisseria meningitidis MC58

45.213

100

0.455