Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LKM46_RS05800 Genome accession   NZ_CP086016
Coordinates   1245404..1246741 (-) Length   445 a.a.
NCBI ID   WP_042168494.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1240404..1251741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS05770 (LKM46_05770) pilX 1241055..1241642 (-) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  LKM46_RS05775 (LKM46_05775) pilW 1241639..1242463 (-) 825 WP_042168489.1 type 4a pilus minor pilin PilW -
  LKM46_RS05780 (LKM46_05780) pilV 1242460..1243017 (-) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  LKM46_RS05785 (LKM46_05785) - 1243008..1243514 (-) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  LKM46_RS05790 (LKM46_05790) - 1243620..1244129 (-) 510 WP_039028119.1 GspH/FimT family pseudopilin -
  LKM46_RS05795 (LKM46_05795) thiO 1244264..1245358 (+) 1095 WP_033972971.1 glycine oxidase ThiO -
  LKM46_RS05800 (LKM46_05800) pilR 1245404..1246741 (-) 1338 WP_042168494.1 two-component system response regulator PilR Regulator
  LKM46_RS05805 (LKM46_05805) pilS 1246756..1248348 (-) 1593 WP_039028118.1 two-component system sensor histidine kinase PilS Regulator
  LKM46_RS05810 (LKM46_05810) - 1248338..1248583 (-) 246 WP_003102591.1 PP0621 family protein -
  LKM46_RS05815 (LKM46_05815) - 1248740..1249765 (-) 1026 WP_042168497.1 outer membrane protein assembly factor BamD -
  LKM46_RS05820 (LKM46_05820) rluD 1249911..1250873 (+) 963 WP_033972915.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LKM46_RS05825 (LKM46_05825) pgeF 1250870..1251598 (+) 729 WP_033972914.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49767.09 Da        Isoelectric Point: 5.8654

>NTDB_id=622053 LKM46_RS05800 WP_042168494.1 1245404..1246741(-) (pilR) [Pseudomonas aeruginosa isolate KB-PA_3]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGTSQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=622053 LKM46_RS05800 WP_042168494.1 1245404..1246741(-) (pilR) [Pseudomonas aeruginosa isolate KB-PA_3]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAGCTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGGAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCCTGCGCAACCCGGAGGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAATCACCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCATGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGTGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGAGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCAGCCGAAGTCGGCGCCGGGCGCTTCCGCCAAGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGACTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTTCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTACCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAGGAGACGCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384