Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LKM46_RS05780 Genome accession   NZ_CP086016
Coordinates   1242460..1243017 (-) Length   185 a.a.
NCBI ID   WP_003125211.1    Uniprot ID   A0A6A9K9C7
Organism   Pseudomonas aeruginosa isolate KB-PA_3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1237460..1248017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LKM46_RS05765 (LKM46_05765) pilY1 1237558..1241043 (-) 3486 WP_228240890.1 type 4a pilus biogenesis protein PilY1 -
  LKM46_RS05770 (LKM46_05770) pilX 1241055..1241642 (-) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  LKM46_RS05775 (LKM46_05775) pilW 1241639..1242463 (-) 825 WP_042168489.1 type 4a pilus minor pilin PilW -
  LKM46_RS05780 (LKM46_05780) pilV 1242460..1243017 (-) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  LKM46_RS05785 (LKM46_05785) - 1243008..1243514 (-) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  LKM46_RS05790 (LKM46_05790) - 1243620..1244129 (-) 510 WP_039028119.1 GspH/FimT family pseudopilin -
  LKM46_RS05795 (LKM46_05795) thiO 1244264..1245358 (+) 1095 WP_033972971.1 glycine oxidase ThiO -
  LKM46_RS05800 (LKM46_05800) pilR 1245404..1246741 (-) 1338 WP_042168494.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20087.19 Da        Isoelectric Point: 8.2171

>NTDB_id=622052 LKM46_RS05780 WP_003125211.1 1242460..1243017(-) (pilV) [Pseudomonas aeruginosa isolate KB-PA_3]
MLLKSRHRSLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=622052 LKM46_RS05780 WP_003125211.1 1242460..1243017(-) (pilV) [Pseudomonas aeruginosa isolate KB-PA_3]
ATGCTATTGAAATCGCGACACAGGTCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGTACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGATACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9K9C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989