Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LJC78_RS21950 Genome accession   NZ_CP086007
Coordinates   4108221..4108739 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. natto strain SCP010-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4103221..4113739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJC78_RS21925 (LJC78_21930) - 4103481..4104509 (+) 1029 WP_014481504.1 AAA family ATPase -
  LJC78_RS21930 (LJC78_21935) - 4104487..4105761 (+) 1275 WP_014481505.1 MFS transporter -
  LJC78_RS21935 (LJC78_21940) - 4106666..4107055 (-) 390 Protein_4273 LacI family DNA-binding transcriptional regulator -
  LJC78_RS21940 (LJC78_21945) xth 4107115..4107873 (-) 759 WP_014481508.1 exodeoxyribonuclease III -
  LJC78_RS21945 (LJC78_21950) rpsR 4107938..4108177 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  LJC78_RS21950 (LJC78_21955) ssbA 4108221..4108739 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  LJC78_RS21955 (LJC78_21960) rpsF 4108780..4109067 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  LJC78_RS21960 (LJC78_21965) ychF 4109178..4110278 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  LJC78_RS21965 (LJC78_21970) yyaE 4110405..4112408 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  LJC78_RS21970 (LJC78_21975) yyzM 4112459..4112665 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=622010 LJC78_RS21950 WP_003219228.1 4108221..4108739(-) (ssbA) [Bacillus subtilis subsp. natto strain SCP010-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=622010 LJC78_RS21950 WP_003219228.1 4108221..4108739(-) (ssbA) [Bacillus subtilis subsp. natto strain SCP010-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378