Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LK401_RS01605 Genome accession   NZ_CP085952
Coordinates   320381..321601 (-) Length   406 a.a.
NCBI ID   WP_011271971.1    Uniprot ID   Q4QNP6
Organism   Haemophilus influenzae strain FDAARGOS_1560     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315381..326601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK401_RS01550 (LK401_01550) - 315446..315652 (-) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  LK401_RS01555 (LK401_01555) - 315726..315932 (-) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  LK401_RS01560 (LK401_01560) - 316006..316212 (-) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  LK401_RS01565 (LK401_01565) - 316287..316493 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  LK401_RS01570 (LK401_01570) - 316567..316773 (-) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  LK401_RS01575 (LK401_01575) - 316847..317053 (-) 207 WP_005686717.1 heavy-metal-associated domain-containing protein -
  LK401_RS01580 (LK401_01580) - 317128..317334 (-) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  LK401_RS01585 (LK401_01585) cueR 317411..317797 (+) 387 WP_005663006.1 Cu(I)-responsive transcriptional regulator -
  LK401_RS01590 (LK401_01590) metJ 317811..318128 (-) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  LK401_RS01595 (LK401_01595) rho 318376..319638 (+) 1263 WP_005629550.1 transcription termination factor Rho -
  LK401_RS01600 (LK401_01600) pilD 319692..320384 (-) 693 WP_038440789.1 A24 family peptidase Machinery gene
  LK401_RS01605 (LK401_01605) pilC 320381..321601 (-) 1221 WP_011271971.1 type II secretion system F family protein Machinery gene
  LK401_RS01610 (LK401_01610) pilB 321594..322991 (-) 1398 WP_038440787.1 GspE/PulE family protein Machinery gene
  LK401_RS01615 (LK401_01615) pilA 322988..323437 (-) 450 WP_011271973.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LK401_RS01620 (LK401_01620) ampD 323552..324112 (+) 561 WP_011271974.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LK401_RS01625 (LK401_01625) corC 324734..325633 (+) 900 WP_005656283.1 CNNM family magnesium/cobalt transport protein CorC -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46259.57 Da        Isoelectric Point: 10.0444

>NTDB_id=621571 LK401_RS01605 WP_011271971.1 320381..321601(-) (pilC) [Haemophilus influenzae strain FDAARGOS_1560]
MTKKLFYYQGSNALNQKQKGSIIADTKQQAHFQLISRGLTHIKLQQNWQFGAKPKNSEISELLNQLATLLQSVIPLKNSL
QILQQNCTQIMLNKWLERLLQSIESGLAFSQAIEQQGKYLTQQEIQLIQVGEMTGKLAVVCKKIATHRSQSLALQRKLQK
IMLYPSMVLGISLLLTLALLLFIAPQFAEMYSGNNAELPTITAILLSISNFLKQNIGILLFFVLSFFLFYYFYLKRQTWF
HQKKNQLISITPIFGTIQKLSRLVNFSQSLQIMLQAGVPLNQALDSFLPRTQTWQTKKTLVNDMVLDKEVRSILQWVSQG
YAFSNSVSSDLFPMEAQQMLQIGEQSGKLALMLEHIADNYQEKLNHQIDLLSQMLEPLMMVIIGSLIGIIMMGMYLPIFN
MGSVIQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=621571 LK401_RS01605 WP_011271971.1 320381..321601(-) (pilC) [Haemophilus influenzae strain FDAARGOS_1560]
ATGACTAAAAAACTCTTTTATTATCAAGGTAGTAACGCATTAAATCAGAAACAAAAAGGCTCAATTATTGCGGATACGAA
ACAACAAGCGCACTTTCAGTTAATAAGCCGCGGGCTTACTCACATCAAATTACAACAAAACTGGCAATTTGGGGCAAAAC
CCAAAAATTCAGAAATCAGTGAATTACTCAATCAATTAGCGACATTGCTACAGTCCGTAATTCCGTTAAAAAACAGCCTA
CAAATTTTGCAACAAAATTGTACTCAAATTATGCTCAACAAATGGCTTGAACGACTGCTTCAATCCATTGAATCTGGCTT
AGCATTCTCACAAGCCATTGAACAACAAGGAAAATATCTCACACAACAAGAAATTCAACTGATTCAAGTGGGAGAAATGA
CAGGAAAACTTGCCGTAGTTTGTAAAAAAATAGCCACGCACCGTAGTCAATCTTTGGCTTTACAACGCAAATTACAGAAA
ATTATGTTATATCCCTCAATGGTATTGGGAATTTCTCTATTATTGACACTCGCATTACTGCTTTTTATCGCGCCTCAATT
TGCTGAAATGTACAGTGGCAATAATGCGGAGTTACCAACAATAACCGCAATATTGCTCTCAATATCTAATTTCCTTAAGC
AAAATATTGGCATTTTGCTATTTTTCGTTTTGAGTTTTTTTCTATTTTATTATTTCTATCTAAAACGCCAGACTTGGTTT
CATCAAAAGAAAAATCAACTTATTTCTATCACGCCTATTTTTGGCACAATTCAAAAGCTTTCACGTTTAGTGAACTTTAG
TCAAAGTTTACAAATTATGTTGCAGGCCGGCGTACCGCTTAATCAGGCACTAGACAGTTTTCTTCCTCGCACACAAACTT
GGCAAACCAAGAAAACGCTTGTAAACGATATGGTATTAGATAAAGAAGTGCGGTCAATTTTGCAATGGGTTTCTCAAGGC
TATGCGTTTTCTAATAGCGTAAGTAGCGATCTTTTCCCGATGGAAGCACAACAAATGCTACAAATTGGCGAACAAAGCGG
AAAACTCGCTTTGATGCTAGAGCATATCGCAGATAATTACCAAGAAAAACTTAATCATCAAATTGACTTACTCTCACAAA
TGCTAGAACCATTAATGATGGTAATCATCGGCAGTCTGATTGGGATTATTATGATGGGAATGTATTTACCTATCTTTAAT
ATGGGATCAGTTATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae 86-028NP

100

100

1
  pilC Haemophilus influenzae Rd KW20

97.783

100

0.978
  pilC Glaesserella parasuis strain SC1401

38.155

98.768

0.377