Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   LK431_RS01200 Genome accession   NZ_CP085951
Coordinates   232471..232884 (+) Length   137 a.a.
NCBI ID   WP_021034381.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1561     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227471..237884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK431_RS01180 (LK431_01180) - 227956..230550 (-) 2595 WP_110430713.1 penicillin-binding protein 1A -
  LK431_RS01185 (LK431_01185) comA 230649..231446 (+) 798 WP_110430714.1 pilus assembly protein PilM Machinery gene
  LK431_RS01190 (LK431_01190) comB 231447..231956 (+) 510 WP_111695366.1 competence protein B Machinery gene
  LK431_RS01195 (LK431_01195) comC 231953..232474 (+) 522 WP_111695365.1 competence protein C Machinery gene
  LK431_RS01200 (LK431_01200) comD 232471..232884 (+) 414 WP_021034381.1 pilus assembly protein PilP Machinery gene
  LK431_RS01205 (LK431_01205) comE 232894..234237 (+) 1344 WP_021034382.1 type IV pilus secretin PilQ Machinery gene
  LK431_RS01210 (LK431_01210) tnpA 234234..234687 (+) 454 Protein_218 IS200/IS605 family transposase -
  LK431_RS01215 (LK431_01215) - 234935..235621 (+) 687 WP_021034384.1 ComF family protein -
  LK431_RS01220 (LK431_01220) nfuA 235697..236293 (+) 597 WP_021034385.1 Fe-S biogenesis protein NfuA -
  LK431_RS01225 (LK431_01225) nudC 236361..237155 (+) 795 WP_021034386.1 NAD(+) diphosphatase -
  LK431_RS01230 (LK431_01230) - 237191..237781 (+) 591 WP_021034387.1 YjaG family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15658.77 Da        Isoelectric Point: 4.3509

>NTDB_id=621544 LK431_RS01200 WP_021034381.1 232471..232884(+) (comD) [Haemophilus influenzae strain FDAARGOS_1561]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLLDQNLQIYSVLEGVDVAQEGYIVEKIDQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=621544 LK431_RS01200 WP_021034381.1 232471..232884(+) (comD) [Haemophilus influenzae strain FDAARGOS_1561]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCGTTTGCGTTATTGCTGGATCAGAATTTGCAAATTTACAGTGTTTTAGAGGGTGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCGACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

94.161

100

0.942
  comD Haemophilus influenzae Rd KW20

93.431

100

0.934