Detailed information NTG0621134

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LIS66_RS22770
• Genome accession: NZ_CP085885
• Coordinates: 5146940..5147812 (+)
• Length: 290 a.a.
• NCBI ID: WP_227973086.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HN2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5141940..5152812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIS66_RS22745 (LIS66_22745)	-	5142134..5142433 (+)	300	WP_227973084.1	DUF2845 domain-containing protein	-
LIS66_RS22750 (LIS66_22750)	-	5142701..5143054 (-)	354	WP_064364127.1	BON domain-containing protein	-
LIS66_RS22755 (LIS66_22755)	-	5143354..5143791 (-)	438	WP_227973085.1	pilin	-
LIS66_RS22760 (LIS66_22760)	pilB	5144018..5145718 (+)	1701	WP_042610478.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LIS66_RS22765 (LIS66_22765)	pilC	5145721..5146938 (+)	1218	WP_065615667.1	type II secretion system F family protein	Machinery gene
LIS66_RS22770 (LIS66_22770)	pilD	5146940..5147812 (+)	873	WP_227973086.1	prepilin peptidase	Machinery gene
LIS66_RS22775 (LIS66_22775)	coaE	5147809..5148432 (+)	624	WP_227973087.1	dephospho-CoA kinase	-
LIS66_RS22780 (LIS66_22780)	yacG	5148429..5148629 (+)	201	WP_016773149.1	DNA gyrase inhibitor YacG	-
LIS66_RS22785 (LIS66_22785)	-	5148679..5149368 (-)	690	WP_083353590.1	energy-coupling factor ABC transporter permease	-
LIS66_RS22790 (LIS66_22790)	-	5149558..5150184 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
LIS66_RS22795 (LIS66_22795)	-	5150181..5150708 (+)	528	WP_042610484.1	MOSC domain-containing protein	-
LIS66_RS22800 (LIS66_22800)	-	5150760..5150933 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
LIS66_RS22805 (LIS66_22805)	-	5150997..5152295 (+)	1299	WP_227973088.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32040.29 Da
• Isoelectric Point: 7.3656

>NTDB_id=621134 LIS66_RS22770 WP_227973086.1 5146940..5147812(+) (pilD) [Pseudomonas sp. HN2]
MPIDELFAVYPLAFVLTALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPIETPAPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLLLRGRCSACSAPISRRYPLTELTCGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPMLWLGLIVNSFSVFVPLSDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQVLPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=621134 LIS66_RS22770 WP_227973086.1 5146940..5147812(+) (pilD) [Pseudomonas sp. HN2]
ATGCCTATCGACGAACTGTTTGCCGTGTACCCGCTGGCCTTTGTGCTCACCGCGCTGCTGCTTGGTCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGTCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCATTGAAACACCTGCGCCGACTTACAACCTGATGCTGCCACATTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAATATTCCGCTGCTCAGTTATCTGTTGCTGCGCGGGCGCTGCTCGGCCTGCTCGGCACCGATCAGCAGACG
TTACCCGCTGACCGAACTGACCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCACCTTGGCTTCGGCTGGCCGGCGGGTT
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAGCATCAACTGCTGCCCGATGTGCTGGTG
CTACCGATGTTGTGGCTGGGGCTGATCGTCAATAGCTTCAGCGTATTCGTGCCGTTGTCCGATGCGCTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGTTACTCACCGGCAAGGACGGCATCGGCCATGGCGATT
TCAAGCTGCTGGCCTTGCTCGGTGCATGGGGTGGCTGGCAGGTTCTGCCGCTGACCATTCTGTTGTCATCGCTGGTGGGG
GCGATTTTGGGCGTCGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCGTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.386	98.276	0.534
pilD	Vibrio campbellii strain DS40M4	52.281	98.276	0.514
pilD	Neisseria gonorrhoeae MS11	45.993	98.966	0.455
pilD	Acinetobacter baumannii D1279779	46.715	94.483	0.441
pilD	Acinetobacter nosocomialis M2	46.715	94.483	0.441