Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   K7G92_RS10480 Genome accession   NZ_CP085873
Coordinates   2211210..2212520 (+) Length   436 a.a.
NCBI ID   WP_228402806.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_D3081     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2206210..2217520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G92_RS10455 (K7G92_002093) - 2206248..2208815 (-) 2568 WP_049214654.1 penicillin-binding protein 1A -
  K7G92_RS10460 (K7G92_002094) - 2208951..2209736 (+) 786 WP_228402804.1 competence protein ComA -
  K7G92_RS10465 (K7G92_002095) - 2209755..2210270 (+) 516 WP_226690355.1 hypothetical protein -
  K7G92_RS10470 (K7G92_002096) - 2210374..2210805 (+) 432 WP_228402805.1 hypothetical protein -
  K7G92_RS10475 (K7G92_002097) - 2210811..2211200 (+) 390 WP_049214650.1 pilus assembly protein PilP -
  K7G92_RS10480 (K7G92_002098) comE 2211210..2212520 (+) 1311 WP_228402806.1 type IV pilus secretin PilQ Machinery gene
  K7G92_RS10485 (K7G92_002099) aroK 2212737..2213264 (+) 528 WP_046339606.1 shikimate kinase AroK -
  K7G92_RS10490 (K7G92_002100) aroB 2213280..2214368 (+) 1089 WP_049214648.1 3-dehydroquinate synthase -
  K7G92_RS10495 (K7G92_002101) - 2214372..2215265 (+) 894 WP_049214647.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  K7G92_RS10500 (K7G92_002102) - 2215328..2215633 (-) 306 WP_228402807.1 DciA family protein -
  K7G92_RS10505 (K7G92_002103) secM 2215726..2216037 (+) 312 WP_228402808.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 48391.74 Da        Isoelectric Point: 6.3202

>NTDB_id=620998 K7G92_RS10480 WP_228402806.1 2211210..2212520(+) (comE) [Pasteurella canis strain HL_D3081]
MQKGVNYCIKCGLLWLSFVCCVLAQSSETFSIRLKQAPLVEILQQLALQQNKSLVIDNELDGTLSLQLEQTSFEKLLYAV
AKIKQLELHKEGQLYYLSKGFKADKIKSESSQLSPNLVTDSIKLQFAKAEDVMKSLTTGNGSLLSVDGRISVDIRSNLLL
IQDQAESVRNIKKLVSEMDKPVEQIVIEARIVTMTDESLKELGVRWGMFDPTSHKHTLSGSLESNGFLNIQDHLNVNFAT
NVTPAGSVALQLAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVTNGKNDTQSIEFREAVLGL
DVTPQISKDNTILLDMVVSQNSLGPRVAYDKGESISIDKQEINTQVFAKDGETIVLGGVFHDTIMKGVDKVPLLGDLPVL
KHLFSKESERHQKRELVIFVTPHILKQNEIVAKSEQ

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=620998 K7G92_RS10480 WP_228402806.1 2211210..2212520(+) (comE) [Pasteurella canis strain HL_D3081]
ATGCAAAAAGGGGTTAATTATTGTATTAAGTGCGGTCTATTATGGCTTAGTTTTGTTTGTTGTGTGCTAGCGCAATCTAG
TGAGACGTTTTCTATTCGCTTAAAGCAAGCGCCACTAGTTGAAATTTTGCAACAATTAGCGTTACAACAAAACAAAAGTT
TAGTCATTGATAATGAATTAGATGGTACGTTATCACTGCAATTAGAGCAAACTAGTTTTGAGAAATTGTTATATGCCGTA
GCTAAGATTAAACAATTAGAGCTACACAAAGAAGGTCAATTGTATTATTTGAGTAAAGGTTTTAAAGCGGACAAAATAAA
GAGTGAAAGTAGTCAGCTAAGTCCTAATTTAGTAACAGACTCAATAAAATTACAATTTGCTAAAGCAGAAGATGTGATGA
AATCATTGACTACTGGTAATGGCTCTTTATTATCGGTAGATGGGCGTATTAGTGTAGATATACGCAGTAATTTATTATTA
ATTCAAGATCAAGCTGAATCAGTCCGAAATATTAAAAAATTAGTATCAGAAATGGATAAACCTGTTGAACAAATCGTGAT
TGAAGCGCGAATTGTCACTATGACCGATGAAAGCCTAAAAGAGCTGGGCGTTAGATGGGGAATGTTTGATCCTACTTCTC
ATAAACATACTTTATCAGGTAGTTTAGAAAGTAATGGCTTTTTGAATATTCAAGATCATCTCAATGTTAATTTTGCAACT
AATGTAACACCTGCAGGAAGCGTTGCATTACAACTAGCAAAAATTAATGGTCGCTTATTAGACTTGGAATTAACTGCACT
TGAACGAGAGAATAATGTTGAAATTATTGCTAGCCCACGTTTGTTAACGACGAATAAGAAAAGTGCCAGTATTAAGCAGG
GAACAGAAATACCTTATATTGTGACGAATGGTAAAAATGATACACAATCTATTGAATTTCGTGAAGCAGTACTAGGTTTA
GATGTTACACCACAAATCTCAAAAGATAATACTATTTTATTAGATATGGTGGTTAGTCAAAACTCATTAGGACCGAGAGT
GGCTTATGATAAAGGCGAAAGTATTTCAATAGATAAGCAAGAAATTAATACTCAAGTTTTTGCAAAGGATGGTGAAACTA
TTGTTTTAGGCGGAGTATTTCATGATACGATAATGAAAGGCGTAGACAAAGTGCCTCTGCTTGGTGATTTACCTGTATTA
AAACATCTATTTAGTAAAGAAAGTGAACGTCATCAAAAGCGGGAGCTCGTTATTTTTGTGACACCACATATTTTAAAGCA
GAATGAAATAGTCGCAAAATCAGAGCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(121-184)

Bacterial type II and III secretion system protein (Secretin)

(266-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

65.446

100

0.656
  comE Haemophilus influenzae 86-028NP

65.217

100

0.654
  comE Glaesserella parasuis strain SC1401

49.765

97.706

0.486
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.274

97.248

0.401
  pilQ Vibrio cholerae strain A1552

41.274

97.248

0.401
  pilQ Vibrio campbellii strain DS40M4

39.679

100

0.397