Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K7G92_RS06905 Genome accession   NZ_CP085873
Coordinates   1470431..1470943 (+) Length   170 a.a.
NCBI ID   WP_160531248.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_D3081     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1465431..1475943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G92_RS06890 (K7G92_001380) rlmB 1465981..1466718 (+) 738 WP_227797661.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  K7G92_RS06895 (K7G92_001381) sodC 1466799..1467359 (-) 561 WP_049215281.1 superoxide dismutase family protein -
  K7G92_RS06900 (K7G92_001382) uvrA 1467432..1470263 (-) 2832 WP_228402459.1 excinuclease ABC subunit UvrA -
  K7G92_RS06905 (K7G92_001383) ssb 1470431..1470943 (+) 513 WP_160531248.1 single-stranded DNA-binding protein Machinery gene
  K7G92_RS06910 (K7G92_001384) folD 1471115..1471963 (-) 849 WP_228402460.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  K7G92_RS06925 (K7G92_001387) - 1472471..1472668 (+) 198 WP_228403343.1 YadA C-terminal domain-containing protein -
  K7G92_RS06930 (K7G92_001388) tkt 1472771..1474777 (-) 2007 WP_115323396.1 transketolase -
  K7G92_RS06935 (K7G92_001389) tal 1474811..1475764 (-) 954 WP_227797673.1 transaldolase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19174.01 Da        Isoelectric Point: 5.0186

>NTDB_id=620987 K7G92_RS06905 WP_160531248.1 1470431..1470943(+) (ssb) [Pasteurella canis strain HL_D3081]
MAGVNKVIIVGNLGNDPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRNDRPQAGGYAPQASTPQYNSPTSGSYGNNFSSQSNRPQQSAPQSEPPMD
MGFEEDNIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=620987 K7G92_RS06905 WP_160531248.1 1470431..1470943(+) (ssb) [Pasteurella canis strain HL_D3081]
ATGGCTGGAGTAAATAAAGTAATCATTGTGGGCAATTTAGGAAATGATCCTGAAATTCGCACAATGCCAAATGGCGACGC
TGTAGCAAATATTAGCGTTGCAACAAGCGAAAGCTGGATTGATAAAAATACTAACGAACGCCGTGAAATCACAGAATGGC
ATCGCATCGTATTCTATCGTCGTCAAGCTGAAGTGGCTGGAGAGTATTTACGTAAAGGCTCTAAAGTGTATGTAGAAGGA
CGCTTAAGAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTATACAACAGAGATTCAAGGCGATGTACTACAAAT
GCTAGACAGCCGCAATGATCGACCACAAGCAGGTGGTTACGCACCTCAAGCCTCTACGCCACAATACAATTCGCCGACTA
GTGGCAGCTATGGTAATAACTTTAGCTCACAATCTAACCGTCCACAACAGTCTGCACCACAAAGTGAGCCACCAATGGAC
ATGGGCTTTGAAGAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.484

100

0.712
  ssb Vibrio cholerae strain A1552

54.945

100

0.588
  ssb Neisseria meningitidis MC58

42.614

100

0.441
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.435