Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   K7G93_RS10125 Genome accession   NZ_CP085871
Coordinates   2156516..2157826 (+) Length   436 a.a.
NCBI ID   WP_226690357.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_NV12211     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2151516..2162826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G93_RS10100 (K7G93_002023) - 2151554..2154121 (-) 2568 WP_226690353.1 penicillin-binding protein 1A -
  K7G93_RS10105 (K7G93_002024) - 2154257..2155042 (+) 786 WP_226690354.1 competence protein ComA -
  K7G93_RS10110 (K7G93_002025) - 2155061..2155576 (+) 516 WP_226690355.1 hypothetical protein -
  K7G93_RS10115 (K7G93_002026) - 2155680..2156111 (+) 432 WP_228400385.1 hypothetical protein -
  K7G93_RS10120 (K7G93_002027) - 2156117..2156506 (+) 390 WP_258691309.1 pilus assembly protein PilP -
  K7G93_RS10125 (K7G93_002028) comE 2156516..2157826 (+) 1311 WP_226690357.1 type IV pilus secretin PilQ Machinery gene
  K7G93_RS10130 (K7G93_002029) aroK 2158043..2158570 (+) 528 WP_046339606.1 shikimate kinase AroK -
  K7G93_RS10135 (K7G93_002030) aroB 2158586..2159674 (+) 1089 WP_226690358.1 3-dehydroquinate synthase -
  K7G93_RS10140 (K7G93_002031) - 2159678..2160571 (+) 894 WP_049214647.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  K7G93_RS10145 (K7G93_002032) - 2160634..2160939 (-) 306 WP_115323520.1 DciA family protein -
  K7G93_RS10150 (K7G93_002033) secM 2161032..2161343 (+) 312 WP_223667851.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 48407.74 Da        Isoelectric Point: 6.3202

>NTDB_id=620974 K7G93_RS10125 WP_226690357.1 2156516..2157826(+) (comE) [Pasteurella canis strain HL_NV12211]
MQKGVNYCIKCGLLWLSFVCCVLAQSSETFSIRLKQAPLVEILQQLALQQNKSLVIDNELDGTLSLQLEQTSFEKLLYAV
AKIKQLELHKEGQLYYLSKGFKADKIKSESSQLSPNLVTDSIKLQFAKAEDVMKSLTTGNGSLLSVDGRISVDIRSNLLL
IQDQAESVRNIKKLVSEMDKPVEQIVIEARIVTMTDESLKELGVRWGMFDPTSHKHTLSGSLESNGFLNIQDHLNVNFAT
NVTPAGSIALQLAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVTNGKNDTQSIEFREAVLGL
DVTPQISKDNTILLDMAVSQNSLGPRVTYDKGESISIDKQEINTQVFAKDGETIVLGGVFHDTIMKGVDKVPLLGDLPVL
KHLFSKESERHQKRELVIFVTPHILKQNEIVAKSEQ

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=620974 K7G93_RS10125 WP_226690357.1 2156516..2157826(+) (comE) [Pasteurella canis strain HL_NV12211]
ATGCAAAAAGGGGTTAACTATTGTATTAAGTGCGGTCTATTATGGCTTAGTTTTGTTTGTTGTGTGCTAGCGCAATCTAG
TGAGACGTTTTCTATTCGCTTAAAGCAAGCGCCACTAGTTGAAATTTTGCAACAATTAGCGTTACAACAAAACAAAAGTT
TAGTCATTGATAATGAATTAGATGGTACGTTATCACTGCAATTAGAGCAAACTAGTTTTGAGAAATTGTTATATGCCGTA
GCTAAGATTAAACAATTAGAGCTACACAAAGAAGGTCAATTGTATTATTTGAGTAAAGGTTTTAAAGCGGACAAAATAAA
GAGTGAAAGTAGTCAGCTAAGTCCTAATTTAGTAACAGACTCAATAAAATTACAATTTGCTAAAGCAGAAGATGTGATGA
AATCATTGACTACTGGTAATGGCTCTTTATTATCGGTAGATGGGCGTATTAGTGTAGATATACGCAGTAATTTATTGTTA
ATTCAAGATCAAGCTGAATCAGTCCGAAATATTAAAAAATTAGTATCAGAAATGGATAAACCTGTTGAACAAATCGTGAT
TGAAGCGCGAATTGTCACTATGACCGATGAAAGCCTAAAAGAGCTGGGCGTTAGATGGGGAATGTTTGATCCTACTTCTC
ATAAACATACTTTATCAGGTAGTTTAGAAAGTAATGGCTTTTTGAATATTCAAGATCATCTCAATGTTAATTTTGCAACT
AATGTAACACCTGCAGGAAGCATTGCATTACAACTAGCAAAAATTAATGGTCGCTTATTAGATTTGGAATTAACTGCACT
TGAACGAGAGAATAATGTTGAAATTATTGCTAGCCCACGTTTGTTAACGACGAATAAGAAAAGTGCCAGTATTAAGCAGG
GAACAGAAATACCTTATATTGTGACAAATGGTAAAAATGATACACAATCTATTGAATTTCGTGAAGCAGTACTAGGTTTA
GATGTTACACCACAAATCTCAAAAGATAATACTATTTTATTAGATATGGCGGTTAGTCAAAACTCATTAGGACCGAGAGT
GACTTATGATAAAGGCGAAAGTATTTCAATAGATAAGCAAGAAATTAATACTCAAGTTTTTGCAAAGGATGGTGAAACTA
TTGTTTTAGGGGGAGTATTTCATGATACGATAATGAAAGGCGTAGACAAAGTGCCTCTGCTTGGTGATTTACCTGTATTA
AAACATCTATTTAGTAAAGAAAGTGAACGTCATCAAAAGCGGGAGCTCGTTATTTTTGTGACGCCACATATTTTAAAGCA
GAATGAAATAGTCGCAAAATCAGAGCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(266-426)

Bacterial type II/III secretion system short domain (Secretin_N)

(121-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

65.446

100

0.656
  comE Haemophilus influenzae 86-028NP

65.217

100

0.654
  comE Glaesserella parasuis strain SC1401

49.765

97.706

0.486
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.509

97.248

0.404
  pilQ Vibrio cholerae strain A1552

41.509

97.248

0.404
  pilQ Vibrio campbellii strain DS40M4

39.908

100

0.399