Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K7G93_RS02775 Genome accession   NZ_CP085871
Coordinates   592204..592671 (-) Length   155 a.a.
NCBI ID   WP_228400426.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_NV12211     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 587204..597671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G93_RS02735 (K7G93_000548) - 587335..587817 (-) 483 WP_226690765.1 pyruvate kinase -
  K7G93_RS02740 - 587891..588589 (-) 699 WP_226690764.1 Bro-N domain-containing protein -
  K7G93_RS02745 (K7G93_000550) - 588855..589400 (-) 546 WP_016533491.1 hypothetical protein -
  K7G93_RS02755 (K7G93_000552) - 589858..590655 (-) 798 WP_099821951.1 hypothetical protein -
  K7G93_RS02760 (K7G93_000553) - 590742..591110 (-) 369 WP_115173414.1 type II toxin-antitoxin system death-on-curing family toxin -
  K7G93_RS10455 - 591107..591238 (-) 132 WP_256857794.1 hypothetical protein -
  K7G93_RS02765 (K7G93_000554) - 591317..591496 (-) 180 WP_226690763.1 hypothetical protein -
  K7G93_RS02770 (K7G93_000555) - 591498..592202 (+) 705 WP_228400425.1 DUF4145 domain-containing protein -
  K7G93_RS02775 (K7G93_000556) ssb 592204..592671 (-) 468 WP_228400426.1 single-stranded DNA-binding protein Machinery gene
  K7G93_RS02780 (K7G93_000557) - 592682..593383 (-) 702 WP_228400427.1 ERF family protein -
  K7G93_RS02785 (K7G93_000558) - 593426..594070 (-) 645 WP_228400428.1 ribonuclease H-like domain-containing protein -
  K7G93_RS02790 (K7G93_000559) - 594243..594404 (-) 162 WP_228400429.1 hypothetical protein -
  K7G93_RS02795 (K7G93_000560) - 594414..594656 (-) 243 WP_228400430.1 hypothetical protein -
  K7G93_RS02800 (K7G93_000561) - 594741..595388 (-) 648 WP_228400431.1 Bro-N domain-containing protein -
  K7G93_RS02805 (K7G93_000562) - 595645..595968 (-) 324 WP_228400432.1 hypothetical protein -
  K7G93_RS02810 (K7G93_000563) - 596363..596557 (+) 195 WP_014391459.1 hypothetical protein -
  K7G93_RS02815 (K7G93_000564) - 596538..596708 (-) 171 WP_014391460.1 hypothetical protein -
  K7G93_RS02820 (K7G93_000565) - 596721..596951 (-) 231 WP_228400433.1 hypothetical protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17453.31 Da        Isoelectric Point: 5.9261

>NTDB_id=620958 K7G93_RS02775 WP_228400426.1 592204..592671(-) (ssb) [Pasteurella canis strain HL_NV12211]
MAGVNKVIIVGNLGNDPDIRTMPNGDLVANISVATSEAWNDKQTGERREVTEWHRIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQAQANAQANAQALQNNAYANAKSGKPVPPQADNFEEDNIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=620958 K7G93_RS02775 WP_228400426.1 592204..592671(-) (ssb) [Pasteurella canis strain HL_NV12211]
ATGGCTGGAGTCAATAAAGTAATTATAGTCGGAAATTTGGGAAACGATCCTGATATCCGCACAATGCCAAATGGCGACCT
TGTGGCTAATATCAGTGTAGCTACAAGCGAGGCTTGGAATGATAAACAAACTGGCGAACGTCGGGAAGTAACCGAATGGC
ACCGCATCGTATTCTATCGCCGCCAAGCAGAAATTTGCGGGCAGTATCTCAAGAAAGGTTCTAAAGTGTATGTAGAAGGG
CGCTTAAGAACCCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAAGCACAAGCTAACGCACAAGCTAACGCACAAGCACTGCAAAACAATGCTTATGCGA
ATGCGAAAAGTGGAAAGCCTGTACCGCCACAAGCAGATAACTTTGAAGAGGATAATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.641

100

0.755
  ssb Vibrio cholerae strain A1552

61.947

72.903

0.452
  ssb Neisseria meningitidis MC58

52.174

74.194

0.387
  ssb Neisseria gonorrhoeae MS11

52.174

74.194

0.387